Zobrazeno 1 - 10
of 97
pro vyhledávání: '"James Torrance"'
Autor:
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Darwin Tree of Life Consortium, Giulio Formenti, Linelle Abueg, James Torrance, Eugene W. Myers, Richard Durbin, Mark Blaxter, Shane A. McCarthy
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and highly accurate (> Q20). Because of these properties, they have revolutionised genome assembly leading to more accurate and contiguous genomes. In eukaryo
Externí odkaz:
https://doaj.org/article/83a929ea54734f328969ac7528d3ad5f
Autor:
Iliana Bista, Jonathan M. D. Wood, Thomas Desvignes, Shane A. McCarthy, Michael Matschiner, Zemin Ning, Alan Tracey, James Torrance, Ying Sims, William Chow, Michelle Smith, Karen Oliver, Leanne Haggerty, Walter Salzburger, John H. Postlethwait, Kerstin Howe, Melody S. Clark, H. William Detrich, C.-H. Christina Cheng, Eric A. Miska, Richard Durbin
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)
Abstract Numerous novel adaptations characterise the radiation of notothenioids, the dominant fish group in the freezing seas of the Southern Ocean. To improve understanding of the evolution of this iconic fish group, here we generate and analyse new
Externí odkaz:
https://doaj.org/article/a84ba1265012436ab251e62f2ecd1c47
Autor:
James Torrance, Ying Sims, Marcela Uliano-Silva, Sarah Pelan, Ousman Akone-Ella, Diego Ayala, Harriet Johnson, Pierre Kengne, Ksenia Krasheninnikova, Haynes Heaton, Joanna Collins, Alan Tracey, Damon-Lee Pointon, Katharina von Wyschetzki, Alex Makunin, Daniel Neafsey, Mara Lawniczak, Shane McCarthy, Jonathan Wood
Publikováno v:
Wellcome Open Research, Vol 7 (2023)
We present a genome assembly from an individual female Anopheles funestus (the malaria mosquito; Arthropoda; Insecta; Diptera; Culicidae). The genome sequence is 251 megabases in span. The majority of the assembly is scaffolded into three chromosomal
Externí odkaz:
https://doaj.org/article/6100f5bf1e664da7b1352508f13c2c66
Autor:
Simona Secomandi, Guido R. Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Abueg, Jennifer Balacco, Manuela Caprioli, William Chow, Claudio Ciofi, Joanna Collins, Olivier Fedrigo, Luca Ferretti, Arkarachai Fungtammasan, Bettina Haase, Kerstin Howe, Woori Kwak, Gianluca Lombardo, Patrick Masterson, Graziella Messina, Anders P. Møller, Jacquelyn Mountcastle, Timothy A. Mousseau, Joan Ferrer Obiol, Anna Olivieri, Arang Rhie, Diego Rubolini, Marielle Saclier, Roscoe Stanyon, David Stucki, Françoise Thibaud-Nissen, James Torrance, Antonio Torroni, Kristina Weber, Roberto Ambrosini, Andrea Bonisoli-Alquati, Erich D. Jarvis, Luca Gianfranceschi, Giulio Formenti
Publikováno v:
Cell Reports, Vol 42, Iss 1, Pp 111992- (2023)
Summary: Insights into the evolution of non-model organisms are limited by the lack of reference genomes of high accuracy, completeness, and contiguity. Here, we present a chromosome-level, karyotype-validated reference genome and pangenome for the b
Externí odkaz:
https://doaj.org/article/e8b540fa7cef4bd6910b5bfb40b81e7f
Autor:
James Torrance, Ying Sims, Marcela Uliano-Silva, Sarah Pelan, Ousman Akone-Ella, Diego Ayala, Harriet Johnson, Pierre Kengne, Ksenia Krasheninnikova, Haynes Heaton, Joanna Collins, Alan Tracey, Damon-Lee Pointon, Katharina von Wyschetzki, Alex Makunin, Daniel Neafsey, Mara Lawniczak, Shane McCarthy, Jonathan Wood
Publikováno v:
Wellcome Open Research, Vol 7 (2022)
We present a genome assembly from an individual female Anopheles funestus (the malaria mosquito; Arthropoda; Insecta; Diptera; Culicidae). The genome sequence is 251 megabases in span. The majority of the assembly is scaffolded into three chromosomal
Externí odkaz:
https://doaj.org/article/2e194dafe9c34a2e8dc35636ad5c3ce2
Autor:
Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, Samara Brown, Marco Rosario Capodiferro, Farooq O. Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vania Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis, The Vertebrate Genomes Project Consortium
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-22 (2021)
Abstract Background Modern sequencing technologies should make the assembly of the relatively small mitochondrial genomes an easy undertaking. However, few tools exist that address mitochondrial assembly directly. Results As part of the Vertebrate Ge
Externí odkaz:
https://doaj.org/article/cc71db7a3dd94d1194b7e3358514ae34
Autor:
Eerik Aunin, Ulrike Böhme, Damer Blake, Alexander Dove, Michelle Smith, Craig Corton, Karen Oliver, Emma Betteridge, Michael A. Quail, Shane A. McCarthy, Jonathan Wood, Alan Tracey, James Torrance, Ying Sims, Kerstin Howe, Richard Challis, Matthew Berriman, Adam Reid
Publikováno v:
Wellcome Open Research, Vol 6 (2021)
We present a genome assembly from a clonal population of Eimeria tenella Houghton parasites (Apicomplexa; Conoidasida; Eucoccidiorida; Eimeriidae). The genome sequence is 53.25 megabases in span. The entire assembly is scaffolded into 15 chromosomal
Externí odkaz:
https://doaj.org/article/5ead105922c04cb88f736b8543680fb4
Autor:
Jenny C. Dunn, Michael A. Quail, James Torrance, Ying Sims, Marcela Uliano-Silva, Richard Challis, Antony J. Morris, Keith C. Hamer, Sarah Pelan, William Chow, Philip V. Grice, Mark Blaxter, Daniel Mead, Craig Corton, Michelle Smith, Jason Skelton, Karen Oliver, Emma Betteridge, Shane A. McCarthy, Jonathan Threlfall, Jale Dolucan, Kerstin Howe
Publikováno v:
Wellcome Open Research, Vol 6 (2021)
We present a genome assembly from an individual female Streptopelia turtur (the European turtle dove; Chordata; Aves; Columbidae). The genome sequence is 1.18 gigabases in span. The majority of the assembly is scaffolded into 35 chromosomal pseudomol
Externí odkaz:
https://doaj.org/article/3d69c792844649a0ad969e67f4a985fd
Autor:
Michael A. Quail, James Torrance, Ying Sims, Richard Challis, Sarah Pelan, Mark Blaxter, Daniel Mead, Marcela Uliano Da Silva, Angus I. Carpenter, Craig Corton, Michelle Smith, Francesca Floriana Tricomi, Jason Skelton, Karen Oliver, Emma Betteridge, Jale Doulcan, Shane A. McCarthy, Jonathan Wood, Jonathan Threlfall, Kerstin Howe
Publikováno v:
Wellcome Open Research, Vol 6 (2021)
We present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal
Externí odkaz:
https://doaj.org/article/16a40bc428f64614987146163980b836
Autor:
Tom Hansen, Per Gunnar Fjelldal, Sigbjørn Lien, Michelle Smith, Craig Corton, Karen Oliver, Jason Skelton, Emma Betteridge, Jale Doulcan, Olivier Fedrigo, Jacquelyn Mountcastle, Erich Jarvis, Shane A. McCarthy, William Chow, Kerstin Howe, James Torrance, Jonathan Wood, Ying Sims, Leanne Haggerty, Richard Challis, Jonathan Threlfall, Daniel Mead, Richard Durbin, Mark Blaxter
Publikováno v:
Wellcome Open Research, Vol 6 (2021)
We present a genome assembly from an individual female Salmo trutta (the brown trout; Chordata; Actinopteri; Salmoniformes; Salmonidae). The genome sequence is 2.37 gigabases in span. The majority of the assembly is scaffolded into 40 chromosomal pse
Externí odkaz:
https://doaj.org/article/7db60709b0e74599a38bfbf50021873e