Zobrazeno 1 - 10
of 35
pro vyhledávání: '"James S. Eddes"'
Autor:
James S. Eddes, Peter Hoffmann, Shaun R. McColl, Stephan Meding, Martin K. Oehler, Ove J. R. Gustafsson
Publikováno v:
Rapid Communications in Mass Spectrometry. 27:655-670
Ove J. R. Gustafsson, James S. Eddes, Stephan Meding, Shaun R. McColl, Martin K. Oehler and Peter Hoffmann
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5a585818ccc706ced2aaab01f4e9340d
https://doi.org/10.1002/rcm.6488
https://doi.org/10.1002/rcm.6488
Autor:
Rachel J. Hampton-Smith, Michael R. Beard, Kaylene J. Simpson, James S. Eddes, Nicholas S. Eyre, Peter Hoffmann, Amanda L. Aloia
Hepatitis C virus (HCV) NS5A protein is essential for HCV RNA replication and virus assembly. Here we report the identification of NS5A phosphorylation sites Ser-222, Ser-235 and Thr-348 during an infectious HCV replication cycle and demonstrate that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::339c238909cedfb742191a5293c9c97d
https://hdl.handle.net/11541.2/125088
https://hdl.handle.net/11541.2/125088
Autor:
James S. Eddes, Paul Shannon, Mi Youn Brusniak, Lukas N. Mueller, Julian D. Watts, Olga Vitek, Christopher J. Kemp, David S. Campbell, Hui Zhang, Alexander Schmidt, Simon Letarte, Ruedi Aebersold, Karen S. Kelly-Spratt, Hollis Lau
Publikováno v:
Clinical Proteomics. 4:105-116
IntroductionA proof-of-concept demonstration of the use of label-free quantitative glycoproteomics for biomarker discovery workflow is presented in this paper, using a mouse model for skin cancer as an example.Materials and MethodsBlood plasma was co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a52b1de31e1d59a81914b2213aa13d5f
https://doi.org/10.1007/s12014-008-9018-8
https://doi.org/10.1007/s12014-008-9018-8
Autor:
Ruedi Aebersold, Henry H N Lam, Jimmy K. Eng, James S. Eddes, Eric W. Deutsch, Nichole King, Stephen E. Stein
Publikováno v:
PROTEOMICS. 7:655-667
A notable inefficiency of shotgun proteomics experiments is the repeated rediscovery of the same identifiable peptides by sequence database searching methods, which often are time-consuming and error-prone. A more precise and efficient method, in whi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b9ebaae88d6940f2255f1dd4af96040
https://doi.org/10.1002/pmic.200600625
https://doi.org/10.1002/pmic.200600625
Autor:
Sacha Baginsky, Jonas Grossmann, James S. Eddes, Franz F. Roos, Alexey I. Nesvizhskii, Wilhelm Gruissem, Ruedi Aebersold, Mathijs Vogelzang
Publikováno v:
Molecular & Cellular Proteomics. 5:652-670
In mass spectrometry-based proteomics, frequently hundreds of thousands of MS/MS spectra are collected in a single experiment. Of these, a relatively small fraction is confidently assigned to peptide sequences, whereas the majority of the spectra are
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4dcf2e56356dd6d826f8062bb3b418b2
https://doi.org/10.1074/mcp.m500319-mcp200
https://doi.org/10.1074/mcp.m500319-mcp200
Autor:
Jimmy K. Eng, Alex J. Rai, Brian B. Haab, Rong Zeng, Valerie C. Wasinger, Henning Hermjakob, Joshua N. Adkins, Rajasree Menon, William S. Hancock, Helmut E. Meyer, Akhilesh Pandey, Stanley A. Hefta, Joel G. Pounds, Peipei Ping, Thomas W. Blackwell, David W. Speicher, Philip C. Andrews, Robert L. Moritz, Arie Admon, Rong Wang, Rolf Apweiler, Chi Yue Wu, Akira Tsugita, Jong Shin Yoo, Alexander I. Archakov, Gilbert S. Omenn, James S. Eddes, Harald Tammen, Xiaohong Qian, Xiaohang Zhao, Eugene A. Kapp, Daniel W. Chan, David J. States, Samir M. Hanash, Ruedi Aebersold, Young Ki Paik, Richard J. Simpson, Marcin Adamski, Michael Pisano, Ilan Beer
Publikováno v:
Exploring the Human Plasma Proteome
HUPO initiated the Plasma Proteome Project (PPP) in 2002. Its pilot phase has (1) evaluated advantages and limitations of many depletion, fractionation, and MS technology platforms; (2) compared PPP reference specimens of human serum and EDTA, hepari
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eadd270d51ca3aaa38c0b23d01907275
https://doi.org/10.1002/pmic.200500358
https://doi.org/10.1002/pmic.200500358
Autor:
Richard J. Simpson, Lisa M. Connolly, Robert L. Moritz, Eugene A. Kapp, James S. Eddes, David F. Frecklington, Meredith J. Layton
Publikováno v:
PROTEOMICS. 2:1097-1103
Current efforts aimed at developing high-throughput proteomics focus on increasing the speed of protein identification. Although improvements in sample separation, enrichment, automated handling, mass spectrometric analysis, as well as data reduction
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a570ae93f66bc4652ed4168530be74c9
https://doi.org/10.1002/1615-9861(200209)2:9<1097::aid-prot1097>3.0.co
https://doi.org/10.1002/1615-9861(200209)2:9<1097::aid-prot1097>3.0.co
Autor:
James S. Eddes, Joseph J. Pereira, Robert L. Moritz, Richard J. Simpson, Lisa M. Connolly, Gavin E. Reid
Publikováno v:
Electrophoresis. 21:1707-1732
The proteomic definition of plasma membrane proteins is an important initial step in searching for novel tumor marker proteins expressed during the different stages of cancer progression. However, due to the charge heterogeneity and poor solubility o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9a668d1ea930c59ac3f0ea8122be702e
https://doi.org/10.1002/(sici)1522-2683(20000501)21:9<1707::aid-elps1707>3.0.co
https://doi.org/10.1002/(sici)1522-2683(20000501)21:9<1707::aid-elps1707>3.0.co
Autor:
Jimmy K. Eng, Stephen E. Stein, Ruedi Aebersold, James S. Eddes, Eric W. Deutsch, Henry H N Lam
Publikováno v:
Nature Methods. 5:873-875
Recently there has been an increasing interest in using spectral searching as an alternative to traditional database sequence searching methods for peptide identification from tandem mass spectrometry. In spectral searching, the query spectrum is com
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::744a912d1b088f9e68138c40b8211cf5
https://doi.org/10.1038/nmeth.1254
https://doi.org/10.1038/nmeth.1254
Autor:
Gavin E. Reid, James S. Eddes, Richard J. Simpson, Richele K. Rasmussen, Robert L. Moritz, Donna S. Dorow, Hong Ji
Publikováno v:
Electrophoresis. 18:588-598
MLK2, a member of the mixed lineage kinase (MLK) family of protein kinases, first reported by Dorow et al. (Eur. J. Biochem. 1993, 213, 701-710), comprises several distinct structural domains including an src homology-3 (SH3) domain, a kinase catalyt
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::afaf3472b18ee863821a50a1d815a38b
https://doi.org/10.1002/elps.1150180342
https://doi.org/10.1002/elps.1150180342