Zobrazeno 1 - 10
of 15
pro vyhledávání: '"James S Nagai"'
Autor:
Mehdi Joodaki, Mina Shaigan, Victor Parra, Roman D Bülow, Christoph Kuppe, David L Hölscher, Mingbo Cheng, James S Nagai, Michaël Goedertier, Nassim Bouteldja, Vladimir Tesar, Jonathan Barratt, Ian SD Roberts, Rosanna Coppo, Rafael Kramann, Peter Boor, Ivan G Costa
Publikováno v:
Molecular Systems Biology, Vol 20, Iss 2, Pp 57-74 (2023)
Abstract Although clinical applications represent the next challenge in single-cell genomics and digital pathology, we still lack computational methods to analyze single-cell or pathomics data to find sample-level trajectories or clusters associated
Externí odkaz:
https://doaj.org/article/ceee0a1c3cb64384992c14d626f0daf2
Autor:
Alexandre H Aono, James S Nagai, Gabriella da S M Dickel, Rafaela C Marinho, Paulo E A M de Oliveira, João P Papa, Fabio A Faria
Publikováno v:
PLoS ONE, Vol 16, Iss 10, p e0258679 (2021)
Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature a
Externí odkaz:
https://doaj.org/article/a5f561fa30234af5ad2392c6d967cb40
Autor:
Daniel Dimitrov, Dénes Türei, Martin Garrido-Rodriguez, Paul L. Burmedi, James S. Nagai, Charlotte Boys, Ricardo O. Ramirez Flores, Hyojin Kim, Bence Szalai, Ivan G. Costa, Alberto Valdeolivas, Aurélien Dugourd, Julio Saez-Rodriguez
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-13 (2022)
Multiple methods to infer cell-cell communication (CCC) from single cell data are currently available. Here, the authors systematically compare 16 CCC inference resources and 7 methods, and develop the LIANA framework as an interface to use and compa
Externí odkaz:
https://doaj.org/article/4d3fd7c242584bd58262aeacf19fb079
Autor:
Ursula S.A. Stalmann, Bella Banjanin, Inge A.M. Snoeren, James S. Nagai, Nils B. Leimkühler, Ronghui Li, Adam Benabid, Jessica E. Pritchard, Hanna Malyaran, Sabine Neuss, Eric M. Bindels, Ivan G. Costa, Rebekka K. Schneider
Publikováno v:
Experimental Hematology, 110, 28-33. Elsevier Inc.
Experimental hematology 110, 28-33 (2022). doi:10.1016/j.exphem.2022.03.010
Experimental hematology 110, 28-33 (2022). doi:10.1016/j.exphem.2022.03.010
Experimental hematology 110, 28-33 (2022). doi:10.1016/j.exphem.2022.03.010
Published by Elsevier Science, Amsterdam [u.a.]
Published by Elsevier Science, Amsterdam [u.a.]
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ace4205990afb387169679883a2a3b1c
https://pure.eur.nl/en/publications/fbb434bd-e2ec-4606-9e61-88c9bcc644b7
https://pure.eur.nl/en/publications/fbb434bd-e2ec-4606-9e61-88c9bcc644b7
Autor:
Jessica E. Pritchard, Juliette E. Pearce, Inge A.M. Snoeren, Stijn N.R. Fuchs, Katrin Götz, Fabian Peisker, Silke Wagner, Adam Benabid, Niklas Lutterbach, Anna K. Galyga, James S. Nagai, Vanessa Krämer, Monica T. Hannani, Eric Bindels, Kathrin Olschok, Nicolas Chatain, Neha Bhagwat, Andrew Dunbar, Marie-Luise Berres, Steffen Koschmieder, Ross L. Levine, Ivan Costa, Hélène F.E. Gleitz, Rafael Kramann, Rebekka Schneider
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::815ad8da44dab9254594abe7101295c7
https://doi.org/10.2139/ssrn.4381686
https://doi.org/10.2139/ssrn.4381686
Autor:
Felix Schreibing, Monica T. Hannani, Hyojin Kim, James S. Nagai, Fabio Ticconi, Eleanor Fewings, Tore Bleckwehl, Matthias Begemann, Natalia Torow, Christoph Kuppe, Ingo Kurth, Jennifer Kranz, Dario Frank, Teresa M. Anslinger, Patrick Ziegler, Thomas Kraus, Jürgen Enczmann, Vera Balz, Frank Windhofer, Paul Balfanz, Christian Kurts, Gernot Marx, Nikolaus Marx, Michael Dreher, Rebekka K. Schneider, Julio Saez-Rodriguez, Ivan Costa, Sikander Hayat, Rafael Kramann
Publikováno v:
Frontiers in immunology 13, 1066176 (2022). doi:10.3389/fimmu.2022.1066176 special issue: "T Cell Biology / Chen Dong, Speciality Editor; Getahun Abate, Associate Editor; Chiara Agrati, Associate Editor; Taishin Akiyama, Associate Editor"
Frontiers in Immunology, 13:1066176. Frontiers Media S.A.
Frontiers in Immunology, 13:1066176. Frontiers Media S.A.
Frontiers in immunology 13, 1066176 (2022). doi:10.3389/fimmu.2022.1066176 special issue: "T Cell Biology / Chen Dong, Speciality Editor; Getahun Abate, Associate Editor; Chiara Agrati, Associate Editor; Taishin Akiyama, Associate Editor"
Publis
Publis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e35eceda20effe496af2023b0097784
https://pure.eur.nl/en/publications/2d4642e3-e480-4db2-a978-4d9e475bbbef
https://pure.eur.nl/en/publications/2d4642e3-e480-4db2-a978-4d9e475bbbef
Publikováno v:
Cold Spring Harbor : Cold Spring Harbor Laboratory, bioRxiv : the preprint server for biology [1]-5 (2022). doi:10.1101/2022.08.10.503335
The increasing availability of single-cell multi-omics data allows to quantitatively characterize gene regulation. We here describe scMEGA (Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference) to infer gene regulatory networks by c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f0dfbf7d200ec783984899d28f005795
https://doi.org/10.1101/2022.08.10.503335
https://doi.org/10.1101/2022.08.10.503335
Autor:
Jitske Jansen, Bartholomeus T. van den Berge, Martijn van den Broek, Rutger J. Maas, Deniz Daviran, Brigith Willemsen, Rona Roverts, Marit van der Kruit, Christoph Kuppe, Katharina C. Reimer, Gianluca Di Giovanni, Fieke Mooren, Quincy Nlandu, Helmer Mudde, Roy Wetzels, Dirk den Braanker, Naomi Parr, James S. Nagai, Vedran Drenic, Ivan G. Costa, Eric Steenbergen, Tom Nijenhuis, Henry Dijkman, Nicole Endlich, Nicole C. A. J. van de Kar, Rebekka K. Schneider, Jack F. M. Wetzels, Anat Akiva, Johan van der Vlag, Rafael Kramann, Michiel F. Schreuder, Bart Smeets
Publikováno v:
Development (Cambridge), 149(9):dev200198. Company of Biologists Ltd
Development 149(9), dev200198 (2022). doi:10.1242/dev.200198
Development, 149
Development, 149, 9
Development 149(9), dev200198 (2022). doi:10.1242/dev.200198
Development, 149
Development, 149, 9
Development 149(9), dev200198 (2022). doi:10.1242/dev.200198
Published by The Company of Biologists, Cambridge
Published by The Company of Biologists, Cambridge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a7070ea8226d04bed67daf1c0b7b7823
http://www.scopus.com/inward/record.url?scp=85129997517&partnerID=8YFLogxK
http://www.scopus.com/inward/record.url?scp=85129997517&partnerID=8YFLogxK
Autor:
Mehdi Joodaki, Mina Shaigan, Victor Parra, Roman D. Buelow, Christoph Kuppe, David L. Holscher, Mingbo Cheng, James S. Nagai, Nassim Bouteldja, Vladimir Tesar, Jonathan Barratt, Ian S. D. Roberts, Rosanna Coppo, Rafael Kramann, Peter Boor, Ivan G. Costa
Publikováno v:
Cold Spring Harbor : Cold Spring Harbor Laboratory, bioRxiv : the preprint server for biology [1]-24 (2022). doi:10.1101/2022.12.16.520739
Although clinical applications represent the next challenge in single-cell genomics and digital pathology, we still lack computational methods to analyze single-cell and pathomics data to find sample level trajectories or clusters associated with dis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72b38dcefde29a560a55153f98a14383
https://publications.rwth-aachen.de/record/862383
https://publications.rwth-aachen.de/record/862383
Autor:
Christoph Kuppe, Ricardo O. Ramirez Flores, Zhijian Li, Sikander Hayat, Rebecca T. Levinson, Xian Liao, Monica T. Hannani, Jovan Tanevski, Florian Wünnemann, James S. Nagai, Maurice Halder, David Schumacher, Sylvia Menzel, Gideon Schäfer, Konrad Hoeft, Mingbo Cheng, Susanne Ziegler, Xiaoting Zhang, Fabian Peisker, Nadine Kaesler, Turgay Saritas, Yaoxian Xu, Astrid Kassner, Jan Gummert, Michiel Morshuis, Junedh Amrute, Rogier J. A. Veltrop, Peter Boor, Karin Klingel, Linda W. Van Laake, Aryan Vink, Remco M. Hoogenboezem, Eric M. J. Bindels, Leon Schurgers, Susanne Sattler, Denis Schapiro, Rebekka K. Schneider, Kory Lavine, Hendrik Milting, Ivan G. Costa, Julio Saez-Rodriguez, Rafael Kramann
Publikováno v:
Nature
Nature, 608(7924), 766-777. Nature Publishing Group
Nature, 608(7924), 766-777. Nature Publishing Group
Myocardial infarction is a leading cause of death worldwide1. Although advances have been made in acute treatment, an incomplete understanding of remodelling processes has limited the effectiveness of therapies to reduce late-stage mortality2. Here w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1188d2cc4abb14f23887e2ac9e352488
https://pubmed.ncbi.nlm.nih.gov/36214046
https://pubmed.ncbi.nlm.nih.gov/36214046