Zobrazeno 1 - 10
of 155
pro vyhledávání: '"James R. Cole"'
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-13 (2021)
Abstract Background Soil is an important reservoir of antibiotic resistance genes (ARGs), but their potential risk in different ecosystems as well as response to anthropogenic land use change is unknown. We used a metagenomic approach and datasets wi
Externí odkaz:
https://doaj.org/article/2d1eb473832e4f03b24001c39f512ead
Autor:
Xue Guo, Qun Gao, Mengting Yuan, Gangsheng Wang, Xishu Zhou, Jiajie Feng, Zhou Shi, Lauren Hale, Linwei Wu, Aifen Zhou, Renmao Tian, Feifei Liu, Bo Wu, Lijun Chen, Chang Gyo Jung, Shuli Niu, Dejun Li, Xia Xu, Lifen Jiang, Arthur Escalas, Liyou Wu, Zhili He, Joy D. Van Nostrand, Daliang Ning, Xueduan Liu, Yunfeng Yang, Edward. A. G. Schuur, Konstantinos T. Konstantinidis, James R. Cole, C. Ryan Penton, Yiqi Luo, James M. Tiedje, Jizhong Zhou
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Mechanisms and consequences of the acclimation of soil respiration to warming are unclear. Here, the authors combine soil respiration, metagenomics, and functional gene results from a 7-year grassland warming experiment to a microbial-enzyme decompos
Externí odkaz:
https://doaj.org/article/c12d6f8e7a684357bbdf1f8e28b188bc
Autor:
Xuanyu Tao, Jiajie Feng, Yunfeng Yang, Gangsheng Wang, Renmao Tian, Fenliang Fan, Daliang Ning, Colin T. Bates, Lauren Hale, Mengting M. Yuan, Linwei Wu, Qun Gao, Jiesi Lei, Edward A. G. Schuur, Julian Yu, Rosvel Bracho, Yiqi Luo, Konstantinos T. Konstantinidis, Eric R. Johnston, James R. Cole, C. Ryan Penton, James M. Tiedje, Jizhong Zhou
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-12 (2020)
Abstract Background In a warmer world, microbial decomposition of previously frozen organic carbon (C) is one of the most likely positive climate feedbacks of permafrost regions to the atmosphere. However, mechanistic understanding of microbial media
Externí odkaz:
https://doaj.org/article/4680458724ab4311bee0f750fabf54b3
Autor:
Jiajie Feng, Cong Wang, Jiesi Lei, Yunfeng Yang, Qingyun Yan, Xishu Zhou, Xuanyu Tao, Daliang Ning, Mengting M. Yuan, Yujia Qin, Zhou J. Shi, Xue Guo, Zhili He, Joy D. Van Nostrand, Liyou Wu, Rosvel G. Bracho-Garillo, C. Ryan Penton, James R. Cole, Konstantinos T. Konstantinidis, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-12 (2020)
Abstract Background It is well-known that global warming has effects on high-latitude tundra underlain with permafrost. This leads to a severe concern that decomposition of soil organic carbon (SOC) previously stored in this region, which accounts fo
Externí odkaz:
https://doaj.org/article/1cc93da9872743e697976639deaed1d4
Autor:
Jia Liu, Paul Villanueva, Jinlyung Choi, Santosh Gunturu, Yang Ouyang, Lisa K. Tiemann, James R. Cole, Kathryn R. Glanville, Steven J. Hall, Marshall D. McDaniel, Jaejin Lee, Adina Howe
Publikováno v:
mSystems, Vol 6, Iss 5 (2021)
ABSTRACT Genes belonging to the same functional group may include numerous and variable gene sequences, making characterizing and quantifying difficult. Therefore, high-throughput design tools are needed to simultaneously create primers for improved
Externí odkaz:
https://doaj.org/article/d76d92fb63c448c591ec6ebdec73f988
Autor:
Junyi Liang, Zhenghu Zhou, Changfu Huo, Zheng Shi, James R. Cole, Lei Huang, Konstantinos T. Konstantinidis, Xiaoming Li, Bo Liu, Zhongkui Luo, C. Ryan Penton, Edward A. G. Schuur, James M. Tiedje, Ying-Ping Wang, Liyou Wu, Jianyang Xia, Jizhong Zhou, Yiqi Luo
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-9 (2018)
The magnitudes of replenishment and priming, two important but opposing fluxes in soil organic carbon (SOC) dynamics, have not been compared. Here the authors show that the magnitude of replenishment is greater than that of priming, resulting in a ne
Externí odkaz:
https://doaj.org/article/e6ef1c2393534927a482aaa72a76bf42
Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes
Autor:
Jiarong Guo, John F. Quensen, Yanni Sun, Qiong Wang, C. Titus Brown, James R. Cole, James M. Tiedje
Publikováno v:
Frontiers in Genetics, Vol 10 (2019)
Shotgun metagenomics has greatly advanced our understanding of microbial communities over the last decade. Metagenomic analyses often include assembly and genome binning, computationally daunting tasks especially for big data from complex environment
Externí odkaz:
https://doaj.org/article/a9fb7928f23a42adb297b5b0f2518d72
Autor:
Jiajie Feng, C. Ryan Penton, Zhili He, Joy D. Van Nostrand, Mengting M. Yuan, Liyou Wu, Cong Wang, Yujia Qin, Zhou J. Shi, Xue Guo, Edward A. G. Schuur, Yiqi Luo, Rosvel Bracho, Konstantinos T. Konstantinidis, James R. Cole, James M. Tiedje, Yunfeng Yang, Jizhong Zhou
Publikováno v:
mBio, Vol 10, Iss 1 (2019)
ABSTRACT Tundra ecosystems are typically carbon (C) rich but nitrogen (N) limited. Since biological N2 fixation is the major source of biologically available N, the soil N2-fixing (i.e., diazotrophic) community serves as an essential N supplier to th
Externí odkaz:
https://doaj.org/article/927189d12c994c978e5f2991eaac66e0
Autor:
Priscila Pereira Diniz, Beatriz Maria Ferrari Borges, Aline Pacobahyba de Oliveira, Maurício Rizzato Coelho, Osnar Obede da Silva Aragão, Thiago Gonçalves Ribeiro, Fernando Igne Rocha, Bruno José Rodrigues Alves, Márcia Reed Rodrigues Coelho, Eustáquio Souza Dias, James R. Cole, Adina Chuang Howe, Siu Mui Tsai, Ederson da Conceição Jesus
This study investigated the contribution of soil organic layers to bacterial diversity evaluations. We used a forest in the eastern Amazon and an adjacent pasture as model systems. Distinct organic and organo-mineral layers were identified in the for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1beb7350b159726f1915badddc382926
https://doi.org/10.1101/2023.03.03.530969
https://doi.org/10.1101/2023.03.03.530969
Autor:
Linwei Wu, Felix Yang, Jiajie Feng, Xuanyu Tao, Qi Qi, Cong Wang, Edward A. G. Schuur, Rosvel Bracho, Yi Huang, James R. Cole, James M. Tiedje, Jizhong Zhou
Publikováno v:
Molecular Ecology. 31:1403-1415
Microorganisms are major constituents of the total biomass in permafrost regions, whose underlain soils are frozen for at least two consecutive years. To understand potential microbial responses to climate change, here we examined microbial community
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1e4420b7c18722409cfe9d066903d0fd
https://doi.org/10.1111/mec.16319
https://doi.org/10.1111/mec.16319