Zobrazeno 1 - 10 of 11 pro vyhledávání: '"James M. Pflug"'
1
Akademický článek
Phylogeny of the supertribe Nebriitae (Coleoptera, Carabidae) based on analyses of DNA sequence data
Autor: David H. Kavanaugh, David R. Maddison, W. Brian Simison, Sean D. Schoville, Joachim Schmidt, Arnaud Faille, Wendy Moore, James M. Pflug, Sophie L. Archambeault, Tinya Hoang, Jei-Ying Chen
Publikováno v: ZooKeys, Vol 1044, Iss , Pp 41-152 (2021)
The phylogeny of the carabid beetle supertribe Nebriitae is inferred from analyses of DNA sequence data from eight gene fragments including one nuclear ribosomal gene (28S), four nuclear-protein coding genes (CAD, topoisomerase 1, PEPCK, and wingless
Externí odkaz: https://doaj.org/article/ab0a6dd1d5624c51b7503a8e76a1a07c
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2
Akademický článek
Measuring Genome Sizes Using Read-Depth, k-mers, and Flow Cytometry: Methodological Comparisons in Beetles (Coleoptera)
Autor: James M. Pflug, Valerie Renee Holmes, Crystal Burrus, J. Spencer Johnston, David R. Maddison
Publikováno v: G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 3047-3060 (2020)
Measuring genome size across different species can yield important insights into evolution of the genome and allow for more informed decisions when designing next-generation genomic sequencing projects. New techniques for estimating genome size using
Externí odkaz: https://doaj.org/article/503a4b6c8b56459784e6e7b449f77bc8
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3
Akademický článek
Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization
Autor: Grey T. Gustafson, Alana Alexander, John S. Sproul, James M. Pflug, David R. Maddison, Andrew E. Z. Short
Publikováno v: Ecology and Evolution, Vol 9, Iss 12, Pp 6933-6948 (2019)
Abstract Targeted capture and enrichment approaches have proven effective for phylogenetic study. Ultraconserved elements (UCEs) in particular have exhibited great utility for phylogenomic analyses, with the software package phyluce being among the m
Externí odkaz: https://doaj.org/article/f74c9c72ee09425caf1c2494a18832db
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5
Measuring Genome Sizes Using Read-Depth, k-mers, and Flow Cytometry: Methodological Comparisons in Beetles (Coleoptera)
Autor: J. Spencer Johnston, Valerie Renee Holmes, David R. Maddison, Crystal G. Burrus, James M. Pflug
Publikováno v: G3: Genes|Genomes|Genetics
G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 3047-3060 (2020)
Measuring genome size across different species can yield important insights into evolution of the genome and allow for more informed decisions when designing next-generation genomic sequencing projects. New techniques for estimating genome size using
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f7723fd94d974e1a5bdcfe45959dda4
https://doi.org/10.1534/g3.120.401028
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6
Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization
Autor: John S. Sproul, Andrew E. Z. Short, Grey T. Gustafson, James M. Pflug, David R. Maddison, Alana Alexander
Publikováno v: Ecology and Evolution, Vol 9, Iss 12, Pp 6933-6948 (2019)
Ecology and Evolution
Targeted capture and enrichment approaches have proven effective for phylogenetic study. Ultraconserved elements (UCEs) in particular have exhibited great utility for phylogenomic analyses, with the software package phyluce being among the most utili
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::084d9dcb8459d12ecafc100f8d0ea2e4
https://doaj.org/article/f74c9c72ee09425caf1c2494a18832db
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7
Phylogeny of the supertribe Nebriitae (Coleoptera, Carabidae) based on analyses of DNA sequence data
Autor: Sean D. Schoville, Sophie L. Archambeault, Joachim Schmidt, W. Brian Simison, Tinya Hoang, David R. Maddison, Jei Ying Chen, Wendy Moore, David H. Kavanaugh, Arnaud Faille, James M. Pflug
Publikováno v: ZooKeys 1044: 41-152
ZooKeys
ZooKeys, Vol 1044, Iss, Pp 41-152 (2021)
The phylogeny of the carabid beetle supertribe Nebriitae is inferred from analyses of DNA sequence data from eight gene fragments including one nuclear ribosomal gene (28S), four nuclear-protein coding genes (CAD, topoisomerase 1, PEPCK, andwingless)
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::64a51b94f2b6980a96d0017613043421
https://doi.org/10.3897/zookeys.1044.62245
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8
Phylogeny of carabid beetles based upon DNA sequences (Coleoptera: Carabidae)
Autor: David R. Maddison, Aman S. Gill, James M. Pflug, John S. Sproul, Olivia F. Boyd, Kipling Will, Wendy Moore, Alexander L. Wild, Kojun Kanda, Sean Perez, Kelly B. Miller, R. Antonio Gómez
Publikováno v: ARPHA Conference Abstracts 2: e37366
I will present results from our phylogenetic study of the family Carabidae, based on DNA sequences of six gene fragments for about 550 carabid species representing about 80 tribes, as well as transcriptomic data and hybrid capture genomic data for a
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df99f6acdf03e19a740a016c52d6dbdf
https://doi.org/10.3897/aca.2.e37366
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10
Successful Recovery of Nuclear Protein-Coding Genes from Small Insects in Museums Using Illumina Sequencing
Autor: Mark Dasenko, David R. Maddison, Kojun Kanda, John S. Sproul, James M. Pflug
Publikováno v: PLoS ONE, Vol 10, Iss 12, p e0143929 (2015)
PLoS ONE
In this paper we explore high-throughput Illumina sequencing of nuclear protein-coding, ribosomal, and mitochondrial genes in small, dried insects stored in natural history collections. We sequenced one tenebrionid beetle and 12 carabid beetles rangi
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2219500b6dccd9f095a1245aaa15abc
http://europepmc.org/articles/PMC4696846?pdf=render
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