Zobrazeno 1 - 10
of 95
pro vyhledávání: '"James M, Ferguson"'
Autor:
Piper C. Cannon, James M. Ferguson, E. Bryn Pitt, Jason A. Shrand, Shaan A. Setia, Naren Nimmagadda, Eric J. Barth, Nicholas L. Kavoussi, Robert L. Galloway, S. Duke Herrell, Robert J. Webster
Publikováno v:
IEEE Open Journal of Engineering in Medicine and Biology, Vol 5, Pp 133-139 (2024)
Goal: We present a new framework for in vivo image guidance evaluation and provide a case study on robotic partial nephrectomy. Methods: This framework (called the “bystander protocol”) involves two surgeons, one who solely performs the therapeut
Externí odkaz:
https://doaj.org/article/ddd6a104fa14487cabc3a3951e4bc07b
Autor:
Raymond Hall Yip Louie, Curtis Cai, Jerome Samir, Mandeep Singh, Ira W. Deveson, James M. Ferguson, Timothy G. Amos, Helen Marie McGuire, Kavitha Gowrishankar, Thiruni Adikari, Robert Balderas, Martina Bonomi, Marco Ruella, David Bishop, David Gottlieb, Emily Blyth, Kenneth Micklethwaite, Fabio Luciani
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-18 (2023)
Abstract Chimeric antigen receptor (CAR) T cell therapy is effective in treating B cell malignancies, but factors influencing the persistence of functional CAR+ T cells, such as product composition, patients’ lymphodepletion, and immune reconstitut
Externí odkaz:
https://doaj.org/article/012a087278b14da7bf94cbc8b4123134
Autor:
Hiruna Samarakoon, James M. Ferguson, Sasha P. Jenner, Timothy G. Amos, Sri Parameswaran, Hasindu Gamaarachchi, Ira W. Deveson
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-12 (2023)
Abstract Nanopore sequencing is being rapidly adopted in genomics. We recently developed SLOW5, a new file format with advantages for storage and analysis of raw signal data from nanopore experiments. Here we introduce slow5tools, an intuitive toolki
Externí odkaz:
https://doaj.org/article/bdedefea4b9f4108a0dc1f3cdbb52fce
Autor:
Richard J. Edwards, Matt A. Field, James M. Ferguson, Olga Dudchenko, Jens Keilwagen, Benjamin D. Rosen, Gary S. Johnson, Edward S. Rice, La Deanna Hillier, Jillian M. Hammond, Samuel G. Towarnicki, Arina Omer, Ruqayya Khan, Ksenia Skvortsova, Ozren Bogdanovic, Robert A. Zammit, Erez Lieberman Aiden, Wesley C. Warren, J. William O. Ballard
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-19 (2021)
Abstract Background Basenjis are considered an ancient dog breed of central African origins that still live and hunt with tribesmen in the African Congo. Nicknamed the barkless dog, Basenjis possess unique phylogeny, geographical origins and traits,
Externí odkaz:
https://doaj.org/article/6ff5d0c6b0d648a3a470a79f1540a8d8
Autor:
Rowena A. Bull, Thiruni N. Adikari, James M. Ferguson, Jillian M. Hammond, Igor Stevanovski, Alicia G. Beukers, Zin Naing, Malinna Yeang, Andrey Verich, Hasindu Gamaarachchi, Ki Wook Kim, Fabio Luciani, Sacha Stelzer-Braid, John-Sebastian Eden, William D. Rawlinson, Sebastiaan J. van Hal, Ira W. Deveson
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-8 (2020)
Nanopore sequencing (ONT) has been used in SARS-CoV-2 studies, however adoption of ONT for SARS-CoV-2 surveillance has been limited due to common concerns around sequencing accuracy. Here, the authors perform a comprehensive evaluation of ONT analyti
Externí odkaz:
https://doaj.org/article/d77df009f76046bb9bfe8be6833f8152
Autor:
Qian Du, Grady C. Smith, Phuc Loi Luu, James M. Ferguson, Nicola J. Armstrong, C. Elizabeth Caldon, Elyssa M. Campbell, Shalima S. Nair, Elena Zotenko, Cathryn M. Gould, Michael Buckley, Kee-Ming Chia, Neil Portman, Elgene Lim, Dominik Kaczorowski, Chia-Ling Chan, Kirston Barton, Ira W. Deveson, Martin A. Smith, Joseph E. Powell, Ksenia Skvortsova, Clare Stirzaker, Joanna Achinger-Kawecka, Susan J. Clark
Publikováno v:
Cell Reports, Vol 36, Iss 12, Pp 109722- (2021)
Summary: DNA replication timing and three-dimensional (3D) genome organization are associated with distinct epigenome patterns across large domains. However, whether alterations in the epigenome, in particular cancer-related DNA hypomethylation, affe
Externí odkaz:
https://doaj.org/article/a960e9f898d54e74a0e23ec3aac378c2
Autor:
Mandeep Singh, Ghamdan Al-Eryani, Shaun Carswell, James M. Ferguson, James Blackburn, Kirston Barton, Daniel Roden, Fabio Luciani, Tri Giang Phan, Simon Junankar, Katherine Jackson, Christopher C. Goodnow, Martin A. Smith, Alexander Swarbrick
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-13 (2019)
Single cell RNA sequencing generates short reads from one end of a template, providing incomplete transcript coverage and limiting identification of diverse sequences such as antigen receptors. Here the authors combine long read nanopore sequencing w
Externí odkaz:
https://doaj.org/article/c60a66377d0242a7a325fe287cec34d3
Publikováno v:
Robotica. 41:1590-1616
Robots and inertial measurement units (IMUs) are typically calibrated independently. IMUs are placed in purpose-built, expensive automated test rigs. Robot poses are typically measured using highly accurate (and thus expensive) tracking systems. In t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::51694fa8a1e166ee2a5c04c09fcf1d99
https://doi.org/10.1017/s0263574723000012
https://doi.org/10.1017/s0263574723000012
Autor:
Piper C. Cannon, James M. Ferguson, E. Bryn Pitt, Jason A. Shrand, Shaan A. Setia, Naren Nimmagadda, Eric J. Barth, Nicholas L. Kavoussi, Robert L. Galloway, S. Duke Herrell, Robert J. Webster
Publikováno v:
IEEE Open Journal of Engineering in Medicine and Biology. :1-7
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d64b319d32a833d74a94500543c225d9
https://doi.org/10.1109/ojemb.2023.3271853
https://doi.org/10.1109/ojemb.2023.3271853
In silicosimulation of next-generation sequencing data is a technique used widely in the genomics field. However, there is currently a lack of optimal tools for creating simulated data from ‘third-generation’ nanopore sequencing devices, which me
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0fbd6acf55781f9f45e1105ae722782f
https://doi.org/10.1101/2023.05.09.539953
https://doi.org/10.1101/2023.05.09.539953
