Zobrazeno 1 - 10
of 15
pro vyhledávání: '"James Leebens-Mack"'
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-16 (2023)
Abstract To reconstruct the ancestral genome of a set of phylogenetically related descendant species, we use the raccroche pipeline for organizing a large number of generalized gene adjacencies into contigs and then into chromosomes. Separate reconst
Externí odkaz:
https://doaj.org/article/8f63da73a1b04a41877db1ad2b8481f0
Autor:
Prakash Raj Timilsena, Eric K. Wafula, Craig F. Barrett, Saravanaraj Ayyampalayam, Joel R. McNeal, Jeremy D. Rentsch, Michael R. McKain, Karolina Heyduk, Alex Harkess, Matthieu Villegente, John G. Conran, Nicola Illing, Bruno Fogliani, Cécile Ané, J. Chris Pires, Jerrold I. Davis, Wendy B. Zomlefer, Dennis W. Stevenson, Sean W. Graham, Thomas J. Givnish, James Leebens-Mack, Claude W. dePamphilis
Publikováno v:
Frontiers in Plant Science, Vol 13 (2022)
We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families, using 602 conserved single-copy (CSC) genes and 1375 benchmarking single-copy ortholog (BUSCO) genes extracted from genomic and transcriptomic datasets. Phyloge
Externí odkaz:
https://doaj.org/article/251682fdada7476dab1f51d9b098173d
Publikováno v:
Frontiers in Plant Science, Vol 12 (2021)
Externí odkaz:
https://doaj.org/article/8ee923c7abdb423b9dc585fd4e818abf
Autor:
Pawan Khera, Hari D. Upadhyaya, Manish K. Pandey, Manish Roorkiwal, Manda Sriswathi, Pasupuleti Janila, Yufang Guo, Michael R. McKain, Ervin D. Nagy, Steven J. Knapp, James Leebens-Mack, Joann A. Conner, Peggy Ozias-Akins, Rajeev K. Varshney
Publikováno v:
The Plant Genome, Vol 6, Iss 3 (2013)
Kompetitive allele-specific polymerase chain reaction (KASP) assays have emerged as cost-effective marker assays especially for molecular breeding applications. Therefore, a set of 96 informative single nucleotide polymorphisms (SNPs) was used to dev
Externí odkaz:
https://doaj.org/article/c4ec643c17304d5c867825d931e8303b
Autor:
Marc T J Johnson, Eric J Carpenter, Zhijian Tian, Richard Bruskiewich, Jason N Burris, Charlotte T Carrigan, Mark W Chase, Neil D Clarke, Sarah Covshoff, Claude W Depamphilis, Patrick P Edger, Falicia Goh, Sean Graham, Stephan Greiner, Julian M Hibberd, Ingrid Jordon-Thaden, Toni M Kutchan, James Leebens-Mack, Michael Melkonian, Nicholas Miles, Henrietta Myburg, Jordan Patterson, J Chris Pires, Paula Ralph, Megan Rolf, Rowan F Sage, Douglas Soltis, Pamela Soltis, Dennis Stevenson, C Neal Stewart, Barbara Surek, Christina J M Thomsen, Juan Carlos Villarreal, Xiaolei Wu, Yong Zhang, Michael K Deyholos, Gane Ka-Shu Wong
Publikováno v:
PLoS ONE, Vol 7, Iss 11, p e50226 (2012)
Next-generation sequencing plays a central role in the characterization and quantification of transcriptomes. Although numerous metrics are purported to quantify the quality of RNA, there have been no large-scale empirical evaluations of the major de
Externí odkaz:
https://doaj.org/article/751a66f2c68e4bb4b4f78829470fed36
To reconstruct the ancestral genome of a set of phylogenetically related descendant species, we use the raccroche pipeline for organizing a large number of generalized gene adjacencies into contigs and then into chromosomes. Separate reconstructions
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5644396d4f260bda62d38fa4984bd123
https://doi.org/10.1101/2022.09.28.509880
https://doi.org/10.1101/2022.09.28.509880
Autor:
Clive T., Darwell, Saravanaraj, Ayyampalayam, James, Leebens-Mack, Chris I., Smith, Kari A., Segraves, David M., Althoff
Publikováno v:
Arthropod Systematics & Phylogeny. 76(1):59-64
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=jairo_______::3e0005a9404e6473014712a3e672858b
http://id.nii.ac.jp/1394/00000690/
http://id.nii.ac.jp/1394/00000690/
Autor:
Marc T. J. Johnson, Eric J. Carpenter, Zhijian Tian, Richard Bruskiewich, Jason N. Burris, Charlotte T. Carrigan, Mark W. Chase, Neil D. Clarke, Sarah Covshoff, Claude W. dePamphilis, Patrick P. Edger, Falicia Goh, Sean Graham, Stephan Greiner, Julian M. Hibberd, Ingrid Jordon-Thaden, Toni M. Kutchan, James Leebens-Mack, Michael Melkonian, Nicholas Miles, Henrietta Myburg, Jordan Patterson, J. Chris Pires, Paula Ralph, Megan Rolf, Rowan F. Sage, Douglas Soltis, Pamela Soltis, Dennis Stevenson, C. Neal Stewart Jr, Barbara Surek, Christina J. M. Thomsen, Juan Carlos Villarreal, Xiaolei Wu, Yong Zhang, Michael K. Deyholos, Gane Ka-Shu Wong
This protocol is part of a collection of eighteen protocols used to isolate total RNA from plant tissue. (RNA Isolation from Plant Tissue Collection: https://www.protocols.io/view/rna-isolation-from-plant-tissue-439gyr6) and was originally published
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::517eee0832345d1f8a3bf6747d9554a7
https://doi.org/10.17504/protocols.io.4rfgv3n
https://doi.org/10.17504/protocols.io.4rfgv3n
Concomitant loss of NDH complex‐related genes within chloroplast and nuclear genomes in some orchids
Autor:
Ming‐Che Shih, Chi‐Chou Chiu, Jer‐Ming Hu, Chen‐Jui Yang, Han CW Hsiao, Choun‐Sea Lin, Wen Wang, Gane Ka‐Shu Wong, Wan‐Jung Chang, Xiao‐Hua Jin, James Leebens‐Mack, Claude W Pamphilis, Yao‐Ting Huang, Jeremy JW Chen, Ling‐Hung Yang, Ling Kui
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::43a0db64a4faa89650ab508525317a2e
Publikováno v:
Ecology and Evolution
There is a growing appreciation for the importance of hybrid speciation in angiosperm evolution. Here, we show that Yucca gloriosa (Asparagaceae: Agavoideae) is the product of intersectional hybridization between Y. aloifolia and Y. filamentosa. Thes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ba57fdcbcff77cf53e8b35fe2dc8c10
https://doi.org/10.1002/ece3.328
https://doi.org/10.1002/ece3.328