Zobrazeno 1 - 10 of 46 pro vyhledávání: '"James J. Clarkson"'
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Akademický článek
Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
Autor: Grace E. Brewer, James J. Clarkson, Olivier Maurin, Alexandre R. Zuntini, Vanessa Barber, Sidonie Bellot, Nicola Biggs, Robyn S. Cowan, Nina M. J. Davies, Steven Dodsworth, Sara L. Edwards, Wolf L. Eiserhardt, Niroshini Epitawalage, Sue Frisby, Aurélie Grall, Paul J. Kersey, Lisa Pokorny, Ilia J. Leitch, Félix Forest, William J. Baker
Publikováno v: Frontiers in Plant Science, Vol 10 (2019)
The world’s herbaria collectively house millions of diverse plant specimens, including endangered or extinct species and type specimens. Unlocking genetic data from the typically highly degraded DNA obtained from herbarium specimens was difficult u
Externí odkaz: https://doaj.org/article/1b3e0b1617c4432286f1fc1e9e6b861c
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2
Akademický článek
Phylogenetic relationships in Apocynaceae based on nuclear PHYA and plastid trnL-F sequences, with a focus on tribal relationships
Autor: Nazia Nazar, James J. Clarkson, David Goyder, Emad Kaky, Tariq Mahmood, Mark W. Chase
Publikováno v: Caryologia, Vol 72, Iss 1 (2019)
To date, most molecular phylogenetic studies of Apocynaceae have been based on plastid DNA regions or nuclear ribosomal DNA. In this study, we used part of the PHYA (phytochrome A) exon, a low-copy nuclear gene, and combined it with the trnL-F region
Externí odkaz: https://doaj.org/article/0636dcbb8edd49589818f225c17e4dd4
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3
A higher‐level nuclear phylogenomic study of the carrot family (Apiaceae)
Autor: Karime Gutierrez, Alexandre R. Zuntini, Paul Bailey, Mary Ann Feist, Panagiota Malakasi, Gregory M. Plunkett, Antoine N. Nicolas, Olivier Maurin, Niroshini Epitawalage, William J. Baker, Sue Zmarzty, Grace E. Brewer, James F. Smith, Stephen R. Downie, James J. Clarkson, Félix Forest
Publikováno v: American Journal of Botany. 108:1252-1269
PREMISE The carrot family (Apiaceae) comprises 466 genera, which include many well-known crops (e.g., aniseed, caraway, carrots, celery, coriander, cumin, dill, fennel, parsley, and parsnips). Higher-level phylogenetic relationships among subfamilies
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d024c79d749b77f50afb7455fba9310d
https://doi.org/10.1002/ajb2.1701
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4
Settling a family feud: a high‐level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes
Autor: Shannon C. K. Straub, Tatyana Livshultz, Claes Persson, Niroshini Epitawalage, James J. Clarkson, Lisa Pokorny, Kent Kainulainen, Félix Forest, Grace E. Brewer, Lena Struwe, Alexandre R. Zuntini, Aaron P. Davis, Olivier Maurin, David J. Goyder, Alexandre Antonelli, William J. Baker
Publikováno v: American Journal of Botany. 108:1143-1165
PREMISE Comprising five families that vastly differ in species richness-ranging from Gelsemiaceae with 13 species to the Rubiaceae with 13,775 species-members of the Gentianales are often among the most species-rich and abundant plants in tropical fo
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::4332e17f7f4fef84aa2a2f77b8b1d352
https://doi.org/10.1002/ajb2.1697
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5
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
Autor: Lisa Pokorny, Alexandre R. Zuntini, Shyamali Roy, David Bishop, Berta Gallego, Elaine Françoso, Kevin Leempoel, Niroshini Epitawalage, Olivier Maurin, Vanessa Barber, Laura R. Botigué, William J. Baker, Félix Forest, Paul J. Kersey, Jeffrey Cook, Wolf L. Eiserhardt, Eduardo Toledo, Abigail Barker, Malcolm Stone, James J. Clarkson, Ilia J. Leitch, Grace E. Brewer, Norman J. Wickett, Tom Carruthers, Sidonie Bellot, Jan T. Kim, Matthew G. Johnson, Steven Dodsworth, Robyn S. Cowan, Paul Bailey, Catherine McGinnie
Publikováno v: Digital.CSIC. Repositorio Institucional del CSIC
instname
Baker, W J, Bailey, P, Barber, V, Barker, A, Bellot, S, Bishop, D, Botigué, L R, Brewer, G, Carruthers, T, Clarkson, J J, Cook, J, Cowan, R S, Dodsworth, S, Epitawalage, N, Françoso, E, Gallego, B, Johnson, M G, Kim, J T, Leempoel, K, Maurin, O, McGinnie, C, Pokorny, L, Roy, S, Stone, M, Toledo, E, Wickett, N J, Zuntini, A R, Eiserhardt, W L, Kersey, P J, Leitch, I J & Forest, F 2022, ' A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life ', Systematic Biology, vol. 71, no. 2, pp. 301-319 . https://doi.org/10.1093/sysbio/syab035
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
The tree of life is the fundamental biological roadmap for navigating the evolution and properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering plants) are fraught with data gaps, despite their critical role in susta
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2f2b2eb135514262e549477cd92f82c4
https://doi.org/10.1093/sysbio/syab035
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7
Habitat specialisation controls ectomycorrhizal fungi above the treeline in the European Alps
Autor: Tuula Niskanen, Ivano Brunner, Laura M. Suz, James J. Clarkson, Beat Frey, Martin I. Bidartondo, Stephan Zimmermann, Tanja Mrak, Ricardo Arraiano-Castilho, Beatrice Senn-Irlet, Ursula Peintner
Publikováno v: New Phytologist. 229:2901-2916
Alpine habitats are one of the most vulnerable ecosystems to environmental change, however, little information is known about the drivers of plant-fungal interactions in these ecosystems and their resilience to climate change. We investigated the inf
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c47427652cdec2529ebcb320b6fb8aa
https://doi.org/10.1111/nph.17033
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9
Microsatellites and petal morphology reveal new patterns of admixture in Orchis hybrid zones
Autor: Jacopo Calevo, Michael F. Fay, Andrew R. Leitch, Ana Juan, James J. Clarkson, Roberta Gargiulo, Robyn S. Cowan, Bertrand Schatz, Joanna Harland, Leif Bersweden, Juan Viruel
Publikováno v: RUA. Repositorio Institucional de la Universidad de Alicante
Universidad de Alicante (UA)
American Journal of Botany
American Journal of Botany, Botanical Society of America, 2021, 108 (8), pp.1388-1404. ⟨10.1002/ajb2.1710⟩
American Journal of Botany, 2021, 108 (8), pp.1388-1404. ⟨10.1002/ajb2.1710⟩
Premise: The genetic structure of hybrid zones provides insight into the potential for gene flow to occur between plant taxa. Four closely related European orchid species (Orchis anthropophora, O. militaris, O. purpurea, and O. simia) hybridize when
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e9b9909b6cec8a934c33f553cbb87a62
http://hdl.handle.net/10045/117308
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10
Akademický článek
Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes.
Autor: Christian Parisod, Corinne Mhiri, K Yoong Lim, James J Clarkson, Mark W Chase, Andrew R Leitch, Marie-Angèle Grandbastien
Publikováno v: PLoS ONE, Vol 7, Iss 11, p e50352 (2012)
Evidence accumulated over the last decade has shown that allopolyploid genomes may undergo drastic reorganization. However, timing and mechanisms of structural diploidization over evolutionary timescales are still poorly known. As transposable elemen
Externí odkaz: https://doaj.org/article/f5de9182dff24910a521bea55c391169
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