Zobrazeno 1 - 10
of 149
pro vyhledávání: '"James J, Cook"'
Publikováno v:
Frontiers in Neuroscience, Vol 16 (2023)
The combination of cellular-resolution whole brain light sheet microscopy (LSM) images with an annotated atlas enables quantitation of cellular features in specific brain regions. However, most existing methods register LSM data with existing canonic
Externí odkaz:
https://doaj.org/article/e35bdad2532d44b0b27a638751cea267
Volumetric analysis of the aging auditory pathway using high resolution magnetic resonance histology
Autor:
Eric Y. Du, Briana K. Ortega, Yuzuru Ninoyu, Robert W. Williams, Gary P. Cofer, James J. Cook, Kathryn J. Hornburg, Yi Qi, G. Allan Johnson, Rick A. Friedman
Publikováno v:
Frontiers in Aging Neuroscience, Vol 14 (2022)
Numerous shown consequences of age-related hearing loss have been unveiled; however, the relationship of the cortical and subcortical structures of the auditory pathway with aging is not well known. Investigations into neural structure analysis remai
Externí odkaz:
https://doaj.org/article/6a8811bcadb44f6385348548acc67a51
Autor:
Syed M. Adil, Evan Calabrese, Lefko T. Charalambous, James J. Cook, Shervin Rahimpour, Ahmet F. Atik, Gary P. Cofer, Beth A. Parente, G. Allan Johnson, Shivanand P. Lad, Leonard E. White
Publikováno v:
NeuroImage, Vol 237, Iss , Pp 118135- (2021)
Conventional atlases of the human brainstem are limited by the inflexible, sparsely-sampled, two-dimensional nature of histology, or the low spatial resolution of conventional magnetic resonance imaging (MRI). Postmortem high-resolution MRI circumven
Externí odkaz:
https://doaj.org/article/a4bc836002e04e399c8eca522bfbd76b
Autor:
G. Allan Johnson, Yuqi Tian, David G. Ashbrook, Gary P. Cofer, James J. Cook, James C. Gee, Adam Hall, Kathryn Hornburg, Yi Qi, Fang-Cheng Yeh, Nian Wang, Leonard E. White, Robert W. Williams
Publikováno v:
Proceedings of the National Academy of Sciences. 120
We have developed workflows to align 3D magnetic resonance histology (MRH) of the mouse brain with light sheet microscopy (LSM) and 3D delineations of the same specimen. We start with MRH of the brain in the skull with gradient echo and diffusion ten
Volumetric analysis of the aging auditory pathway using high resolution magnetic resonance histology
Autor:
Eric Y, Du, Briana K, Ortega, Yuzuru, Ninoyu, Robert W, Williams, Gary P, Cofer, James J, Cook, Kathryn J, Hornburg, Yi, Qi, G Allan, Johnson, Rick A, Friedman
Numerous shown consequences of age-related hearing loss have been unveiled; however, the relationship of the cortical and subcortical structures of the auditory pathway with aging is not well known. Investigations into neural structure analysis remai
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cb6bb2fb661875d022f4b044520033fd
https://escholarship.org/uc/item/96x9r59j
https://escholarship.org/uc/item/96x9r59j
Autor:
Gary P. Cofer, Yi Qi, Forrest Pratson, Kathryn J. Hornburg, James J. Cook, Jaclyn Xiao, G. Allan Johnson
Publikováno v:
NMR in Biomedicine. 35
While the application of diffusion tensor imaging (DTI), tractography, and connectomics to fixed tissue is a common practice today, there have been limited studies examining the effects of fixation on brain microstructure over extended periods. This
Autor:
Brian B. Avants, Natalie A. Delpratt, Alexandra Badea, Robert J. Anderson, Bin Gu, G. Allan Johnson, James O. McNamara, James J. Cook, John Nouls
Publikováno v:
Neuroinformatics
While many neuroscience questions aim to understand the human brain, much current knowledge has been gained using animal models, which replicate genetic, structural, and connectivity aspects of the human brain. While voxel-based analysis (VBA) of pre
Autor:
Beth Parente, James J. Cook, Gary P. Cofer, Evan Calabrese, Syed M Adil, Ahmet Atik, Lefko T Charalambous, G. Allan Johnson, Leonard E. White, Shervin Rahimpour, Shivanand P. Lad
Publikováno v:
NeuroImage
NeuroImage, Vol 237, Iss, Pp 118135-(2021)
NeuroImage, Vol 237, Iss, Pp 118135-(2021)
Conventional atlases of the human brainstem are limited by the inflexible, sparsely-sampled, two-dimensional nature of histology, or the low spatial resolution of conventional magnetic resonance imaging (MRI). Postmortem high-resolution MRI circumven
While the application of diffusion tensor imaging (DTI), tractography, and connectomics to fixed ex-vivo tissue is a common practice today, there have been limited studies examining the effects of fixation on brain microstructure over extended period
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ecb149a443352fc17629e079649748e2
https://doi.org/10.1101/2020.12.02.407338
https://doi.org/10.1101/2020.12.02.407338
Autor:
Leonard E. White, Robert J. Anderson, Forrest Pratson, Rick Laoprasert, Gary P. Cofer, James J. Cook, G. Allan Johnson
Publikováno v:
NeuroImage
NeuroImage, Vol 242, Iss, Pp 118470-(2021)
NeuroImage, Vol 242, Iss, Pp 118470-(2021)
Abstract We describe a multi-contrast, multi-dimensional atlas of the Wistar rat acquired at microscopic spatial resolution using magnetic resonance histology (MRH). Diffusion weighted images, and associated scalar images were acquired of a single sp