Zobrazeno 1 - 10
of 57
pro vyhledávání: '"James Gaffney"'
Autor:
Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W. Dang, Vanessa V. Phelan, Robert A. Quinn, Anton Bankevich, John T. Chang, Tariq M. Rana, Douglas J. Conrad, William J. Sandborn, Larry Smarr, Pieter C. Dorrestein, Pavel A. Pevzner, Rob Knight
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-14 (2019)
Abstract As metagenomic studies move to increasing numbers of samples, communities like the human gut may benefit more from the assembly of abundant microbes in many samples, rather than the exhaustive assembly of fewer samples. We term this approach
Externí odkaz:
https://doaj.org/article/42e8537276ff4a9bba279cd526759a65
Publikováno v:
BioTechniques, Vol 62, Iss 6, Pp 290-293 (2017)
A major bottleneck for metagenomic sequencing is rapid and efficient DNA extraction. Here, we compare the extraction efficiencies of three magnetic bead−based platforms (KingFisher, epMotion, and Tecan) to a standardized column-based extraction pla
Externí odkaz:
https://doaj.org/article/e96d5ec6aa5e4dddbe8bfdab5f69ef8c
Autor:
Robert H. Mills, Yoshiki Vázquez-Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Greg Humphrey, Larry Smarr, Rob Knight, David J. Gonzalez
Publikováno v:
mSystems, Vol 4, Iss 1 (2019)
ABSTRACT Although genetic approaches are the standard in microbiome analysis, proteome-level information is largely absent. This discrepancy warrants a better understanding of the relationship between gene copy number and protein abundance, as this i
Externí odkaz:
https://doaj.org/article/15148f9d8148465693d93ecf4a9779c5
Autor:
Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight
Publikováno v:
mSystems, Vol 3, Iss 3 (2018)
ABSTRACT Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to integrate and the extent of microbial and molecular diversity in human stool remains unk
Externí odkaz:
https://doaj.org/article/0301cbad620f4f3490bc93e225ec5d0c
Autor:
Deepti P. Karumathil, Meera Surendran Nair, James Gaffney, Anup Kollanoor-Johny, Kumar Venkitanarayanan
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
Multi-drug resistant (MDR) Acinetobacter baumannii is a major nosocomial pathogen causing a wide range of clinical conditions with significant mortality rates. A. baumannii strains are equipped with a multitude of antibiotic resistance mechanisms, re
Externí odkaz:
https://doaj.org/article/3250b905ccf9409284542951308f1c58
Autor:
Robert A. Quinn, Jose A. Navas-Molina, Embriette R. Hyde, Se Jin Song, Yoshiki Vázquez-Baeza, Greg Humphrey, James Gaffney, Jeremiah J. Minich, Alexey V. Melnik, Jakob Herschend, Jeff DeReus, Austin Durant, Rachel J. Dutton, Mahdieh Khosroheidari, Clifford Green, Ricardo da Silva, Pieter C. Dorrestein, Rob Knight
Publikováno v:
mSystems, Vol 1, Iss 2 (2016)
ABSTRACT Multi-omics methods have greatly advanced our understanding of the biological organism and its microbial associates. However, they are not routinely used in clinical or industrial applications, due to the length of time required to generate
Externí odkaz:
https://doaj.org/article/0f17874a07d14105893c61eda2b008cf
Publikováno v:
Human Pathology Reports, Vol 34, Iss , Pp 300724- (2023)
Calcifying fibrous tumours of the pleura (CFTPs) are extremely rare benign tumours with uncertain aetiology, with only 34 cases, including this one, reported worldwide to date. CFTPs commonly originate from subcutaneous and deep soft tissues of the g
Externí odkaz:
https://doaj.org/article/24506b2f42ed4277bf6c64ac1cecd012
Publikováno v:
PLoS ONE, Vol 17, Iss 6, p e0269840 (2022)
BackgroundEngaging older adults in clinical communication is an essential aspect of high-quality elder care, patient safety and satisfaction in hospitals and GP clinics. However, the factors that influence older adults' participation during their app
Externí odkaz:
https://doaj.org/article/ddc7d0f704c94514afeffe0e8428b71f
Publikováno v:
International Journal of Systematic and Evolutionary Microbiology. 73
This study presents MP1D12T (=NRRL B-67553T=NCTC 14480T), an isolate from the ruminal content of an Angus steer fed a high grain diet. Phenotypic and genotypic traits of the isolate were explored. MP1D12T was found to be a strictly anaerobic, catalas
Autor:
Andrew Izzo, Grant Gogul, Josh Lefler, Allison Wells, James Gaffney, Jennifer Cao, Norman Pitt, Brian Dirks, Mallory Embree
Publikováno v:
International Journal of Poultry Science. 21:57-64