Zobrazeno 1 - 10
of 60
pro vyhledávání: '"James C. Shaw"'
Autor:
Kern Rei Chng, Janja Paliska Soldo, Barnaby Edward Young, Jia Yu Koh, Kalisvar Marimuthu, Niranjan Nagarajan, Denis Bertrand, James C. Shaw, Amanda Hui Qi Ng, Mile Šikić, Mirta Dvornicic, Chenhao Li, Chengxuan Tong, Oon Tek Ng, Timothy Barkham, Manesh Kalathiyappan, M. Senthil Kumar
Publikováno v:
Nature Biotechnology. 37:937-944
Characterization of microbiomes has been enabled by high-throughput metagenomic sequencing. However, existing methods are not designed to combine reads from short- and long-read technologies. We present a hybrid metagenomic assembler named OPERA-MS t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c2648e5301c77e37a78ff5d9d1ea4d3
https://doi.org/10.1038/s41587-019-0191-2
https://doi.org/10.1038/s41587-019-0191-2
Autor:
James C. Shaw, Yun William Yu
MotivationSelecting a subset of k-mers in a string in a local manner is a common task in bioinformatics tools for speeding up computation. Arguably the most well-known and common method is the minimizer technique, which selects the ‘lowest-ordered
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::24f205debb95c6882d0dc44f37931a39
https://doi.org/10.1101/2021.05.22.445262
https://doi.org/10.1101/2021.05.22.445262
Quantifying evolutionary change among viral genomes is an important clinical device to track critical adaptations geographically and temporally. We built image-based haplotype-guided evolutionary inference (ImHapE) to quantify adaptations in expandin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::dafcbbc3f5513c5440450d18077061bb
https://doi.org/10.1101/2021.01.13.426571
https://doi.org/10.1101/2021.01.13.426571
Autor:
James C. Shaw, Yun William Yu
Resolving haplotypes in polyploid genomes using phase information from sequencing reads is an important and challenging problem. We introduce two new mathematical formulations of polyploid haplotype phasing: (1) the min-sum max tree partition (MSMTP)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ca3bc8c294dc7d0d1d1522e8b52e40ae
https://doi.org/10.1101/2020.11.06.371799
https://doi.org/10.1101/2020.11.06.371799
Publikováno v:
Journal of orthopaedic trauma. 34(11)
OBJECTIVES Multidimensional fluoroscopy is new imaging technology that generates intraoperative cross sectional imaging. Can this technology be used to assess accuracy and safety of percutaneously placed iliosacral screws intraoperatively? DESIGN Ret
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e22e3aaa22c968c1808054230633588
https://pubmed.ncbi.nlm.nih.gov/33065656
https://pubmed.ncbi.nlm.nih.gov/33065656
Publikováno v:
Journal of orthopaedic trauma. 33(8)
Optimal intramedullary treatment of atypical femur fractures associated with bisphosphonate use requires avoidance of postoperative malreduction, particularly varus. This can be difficult to achieve, given the fracture location, errors with nail entr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::99b727314d212d15483b0ddadc59b9c0
https://pubmed.ncbi.nlm.nih.gov/31259798
https://pubmed.ncbi.nlm.nih.gov/31259798
Autor:
Rei Ck, Kalisvar Marimuthu, Soldo Jp, Jia Yu Koh, Denis Bertrand, Barnaby Edward Young, Kalathiappan M, Timothy Barkham, Muthiah S, Mile Šikić, Dvornicic M, Tek No, Chenhao Li, Hui Qi Ng A, Niranjan Nagarajan, James C. Shaw
The analysis of information rich whole-metagenome datasets acquired from complex microbial communities is often restricted by the fragmented nature of assembly from short-read sequencing. The availability of long-reads from third-generation sequencin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16eb9c51fe590c1d57c46dc6424ab566
Publikováno v:
International orthopaedics. 41(10)
Traditional fluoroscopic techniques during percutaneous fixation of the posterior pelvic ring at times cannot adequately visualize errant or malpositioned iliosacral screws. Intra-operative fluoroscopic techniques have been advanced using multi-dimen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b40223a85a76ff186dcad707b777d22d
https://pubmed.ncbi.nlm.nih.gov/28357493
https://pubmed.ncbi.nlm.nih.gov/28357493
Publikováno v:
JAMA dermatology. 151(8)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9fcb5cf178910d5be7c5b2ab629ac3f0
https://pubmed.ncbi.nlm.nih.gov/25946373
https://pubmed.ncbi.nlm.nih.gov/25946373
Publikováno v:
American Journal of Transplantation. 4:1852-1858
The incidence, morbidity and mortality of skin cancer are markedly increased in organ transplant recipients. Efforts aimed at reducing sun exposure through sun avoidance, sunscreens and sun-protective clothing are the most effective means to reduce t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ae9d8c3843daa5f2037f777cf4edc70
https://doi.org/10.1111/j.1600-6143.2004.00584.x
https://doi.org/10.1111/j.1600-6143.2004.00584.x