Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Jafar S. Jabbari"'
Autor:
Yue You, Luyi Tian, Shian Su, Xueyi Dong, Jafar S. Jabbari, Peter F. Hickey, Matthew E. Ritchie
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-32 (2021)
Abstract Background Single-cell RNA-sequencing (scRNA-seq) technologies and associated analysis methods have rapidly developed in recent years. This includes preprocessing methods, which assign sequencing reads to genes to create count matrices for d
Externí odkaz:
https://doaj.org/article/52b16953cfe04fc5a8828e3325d5735b
Autor:
Luyi Tian, Jafar S. Jabbari, Rachel Thijssen, Quentin Gouil, Shanika L. Amarasinghe, Oliver Voogd, Hasaru Kariyawasam, Mei R. M. Du, Jakob Schuster, Changqing Wang, Shian Su, Xueyi Dong, Charity W. Law, Alexis Lucattini, Yair David Joseph Prawer, Coralina Collar-Fernández, Jin D. Chung, Timur Naim, Audrey Chan, Chi Hai Ly, Gordon S. Lynch, James G. Ryall, Casey J. A. Anttila, Hongke Peng, Mary Ann Anderson, Christoffer Flensburg, Ian Majewski, Andrew W. Roberts, David C. S. Huang, Michael B. Clark, Matthew E. Ritchie
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)
Abstract A modified Chromium 10x droplet-based protocol that subsamples cells for both short-read and long-read (nanopore) sequencing together with a new computational pipeline (FLAMES) is developed to enable isoform discovery, splicing analysis, and
Externí odkaz:
https://doaj.org/article/b1aa5d4188e746cca4e60723f7229ae1
Autor:
Danqing Yin, Matthew E. Ritchie, Jafar S. Jabbari, Tamara Beck, Marnie E. Blewitt, Andrew Keniry
Publikováno v:
Genomics Data, Vol 10, Iss C, Pp 97-100 (2016)
Reduced representation bisulfite sequencing (RRBS) provides an efficient method for measuring DNA methylation at single base resolution in regions of high CpG density. This technique has been extensively tested on the HiSeq2500, which uses a 4-colour
Externí odkaz:
https://doaj.org/article/78628c65692342f4b7944e97411c9cb0
Autor:
Matthew N. Nelson, Jafar S. Jabbari, Rust Turakulov, Aneeta Pradhan, Maria Pazos-Navarro, Jacob S. Stai, Steven B. Cannon, Daniel Real
Publikováno v:
Plants, Vol 9, Iss 8, p 973 (2020)
We present the first genetic map of tedera (Bituminaria bituminosa (L.) C.H. Stirton), a drought-tolerant forage legume from the Canary Islands with useful pharmaceutical properties. It is also the first genetic map for any species in the tribe Psora
Externí odkaz:
https://doaj.org/article/d184d9dff36d4e91a41b606a2e9c690f
Autor:
Roger Huerlimann, Jeff A Cowley, Nicholas M Wade, Yinan Wang, Naga Kasinadhuni, Chon-Kit Kenneth Chan, Jafar S Jabbari, Kirby Siemering, Lavinia Gordon, Matthew Tinning, Juan D Montenegro, Gregory E Maes, Melony J Sellars, Greg J Coman, Sean McWilliam, Kyall R Zenger, Mehar S Khatkar, Herman W Raadsma, Dallas Donovan, Gopala Krishna, Dean R Jerry
Publikováno v:
G3: Genes, Genomes, Genetics (2022)
AbstractShrimp are a valuable aquaculture species globally; however, disease remains a major hindrance to shrimp aquaculture sustainability and growth. Mechanisms mediated by endogenous viral elements have been proposed as a means by which shrimp tha
Externí odkaz:
https://doaj.org/article/7dba95ad77444360bd23699adb0e10f5
Autor:
Nusrat Nahar, Greg Tram, Freda E-C Jen, Zachary N Phillips, Lucy A Weinert, Janine T Bossé, Jafar S Jabbari, Quentin Gouil, Mei R M Du, Matthew E Ritchie, Rory Bowden, Paul R Langford, Alexander W Tucker, Michael P Jennings, Conny Turni, Patrick J Blackall, John M Atack
Publikováno v:
Nucleic Acids Research. 51:3240-3260
Actinobacillus pleuropneumoniae is the cause of porcine pleuropneumonia, a severe respiratory tract infection that is responsible for major economic losses to the swine industry. Many host-adapted bacterial pathogens encode systems known as phasevari
Autor:
Xueyi Dong, Mei R. M. Du, Quentin Gouil, Luyi Tian, Jafar S. Jabbari, Rory Bowden, Pedro L. Baldoni, Yunshun Chen, Gordon K. Smyth, Shanika L. Amarasinghe, Charity W. Law, Matthew E. Ritchie
The current lack of benchmark datasets with inbuilt ground-truth makes it challenging to compare the performance of existing long-read isoform detection and differential expression analysis workflows. Here, we present a benchmark experiment using two
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::69cd6c4a297726898cd9091ae2c35315
https://doi.org/10.1101/2022.07.22.501076
https://doi.org/10.1101/2022.07.22.501076
Autor:
Marina Oliva, Tim Stuart, Dave Tang, Jahnvi Pflueger, Daniel Poppe, Jafar S. Jabbari, Scott Gigante, Jonathan Michael Dragwidge, James Whelan, Mathew G. Lewsey, Ryan Lister
Roots are fundamental organs for plant development and response to their environment: they anchor the plant to its growth substrate, uptake nutrients and water vital to plant growth, and can sense and respond to a variety of biotic and abiotic stress
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::68601860538236eade157b3a388a3ddd
https://doi.org/10.1101/2022.03.04.483008
https://doi.org/10.1101/2022.03.04.483008
Autor:
Shanika L. Amarasinghe, Mei R. M. Du, Jakob Schuster, Michael B. Clark, Changqing Wang, Yair David Joseph Prawer, Xueyi Dong, Audrey S. M. Chan, Mary Ann Anderson, Casey J. A. Anttila, James G. Ryall, Gordon S. Lynch, Hasaru Kariyawasam, Ian J. Majewski, Jafar S. Jabbari, Christoffer Flensburg, Andrew W. Roberts, Charity W. Law, Shian Su, Luyi Tian, Hongke Peng, Quentin Gouil, Chi Hai Ly, Coralina Collar-Fernández, Timur Naim, Alexis Lucattini, David C.S. Huang, Rachel Thijssen, Oliver Voogd, Matthew E. Ritchie, Jin D. Chung
Publikováno v:
Genome Biology
Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)
Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)
A modified Chromium 10x droplet-based protocol that subsamples cells for both short-read and long-read (nanopore) sequencing together with a new computational pipeline (FLAMES) is developed to enable isoform discovery, splicing analysis, and mutation
Autor:
Ann E, Frazier, Alison G, Compton, Yoshihito, Kishita, Daniella H, Hock, AnneMarie E, Welch, Sumudu S C, Amarasekera, Rocio, Rius, Luke E, Formosa, Atsuko, Imai-Okazaki, David, Francis, Min, Wang, Nicole J, Lake, Simone, Tregoning, Jafar S, Jabbari, Alexis, Lucattini, Kazuhiro R, Nitta, Akira, Ohtake, Kei, Murayama, David J, Amor, George, McGillivray, Flora Y, Wong, Marjo S, van der Knaap, R, Jeroen Vermeulen, Esko J, Wiltshire, Janice M, Fletcher, Barry, Lewis, Gareth, Baynam, Carolyn, Ellaway, Shanti, Balasubramaniam, Kaustuv, Bhattacharya, Mary-Louise, Freckmann, Susan, Arbuckle, Michael, Rodriguez, Ryan J, Taft, Simon, Sadedin, Mark J, Cowley, André E, Minoche, Sarah E, Calvo, Vamsi K, Mootha, Michael T, Ryan, Yasushi, Okazaki, David A, Stroud, Cas, Simons, John, Christodoulou, David R, Thorburn
Publikováno v:
Med (New York, N.Y.). 2(1)
In about half of all patients with a suspected monogenic disease, genomic investigations fail to identify the diagnosis. A contributing factor is the difficulty with repetitive regions of the genome, such as those generated by segmental duplications.