Wild Relatives of Maize, Rice, Cotton, and Soybean: Treasure Troves for Tolerance to Biotic and Abiotic Stresses

Autor: Jafar Mammadov, Ramesh Buyyarapu, Satish K. Guttikonda, Kelly Parliament, Ibrokhim Y. Abdurakhmonov, Siva P. Kumpatla

Publikováno v: Frontiers in Plant Science, Vol 9 (2018)

Global food demand is expected to nearly double by 2050 due to an increase in the world's population. The Green Revolution has played a key role in the past century by increasing agricultural productivity worldwide, however, limited availability and

Externí odkaz: https://doaj.org/article/6d3a84aea07f4ee6888f41b95bc9b597

Sequencing of 15 622 gene‐bearing BACs clarifies the gene‐dense regions of the barley genome

Autor: Anders Falk, Jane Grimwood, Dave Kudrna, Nils Stein, Rod A. Wing, Ming-Cheng Luo, Matthew J. Moscou, Pascal Condamine, Kavitha Madishetty, Leila Feiz, Prasanna R. Bhat, Phil Bregitzer, Josh Resnik, Yaqin Ma, Jeremy Schmutz, Andris Kleinhofs, Hana Šimková, Roger P. Wise, Shane Heinen, Jaroslav Dolezel, Denisa Duma, Matthew Alpert, Lothar Altschmied, Rachid Ounit, Marco Beccuti, Andreas Graner, Peggy G. Lemaux, Muharrem Dilbirligi, Francesca Cordero, Perry Gustafson, Frank You, Timothy J. Close, Yonghui Wu, Tao Jiang, Jafar Mammadov, Gary J. Muehlbauer, Patrick M. Hayes, Heather Witt, Shiaoman Chao, Laurel Cooper, Jan T. Svensson, Steve Wanamaker, Hamid Mirebrahim, Jie Zheng, Serdar Bozdag, María Muñoz-Amatriaín, Stefano Lonardi, Edmundo Rodriguez, Tom Blake

Publikováno v: The Plant Journal
Muñoz-Amatriaín, M; Lonardi, S; Luo, M; Madishetty, K; Svensson, JT; Moscou, MJ; et al.(2015). Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant Journal, 84(1), 216-227. doi: 10.1111/tpj.12959. UC Riverside: Retrieved from: http://www.escholarship.org/uc/item/6b56x7nt

Summary Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole‐gen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::361a2a258a3886f92e525e368fda08eb
http://europepmc.org/articles/PMC5014227

SNP Markers and Their Impact on Plant Breeding

Autor: Rajat Aggarwal, Ramesh Buyyarapu, Siva P. Kumpatla, Jafar Mammadov

Publikováno v: International Journal of Plant Genomics

The use of molecular markers has revolutionized the pace and precision of plant genetic analysis which in turn facilitated the implementation of molecular breeding of crops. The last three decades have seen tremendous advances in the evolution of mar

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c8496f5b77f9d3327a3a9199ed28fdf
https://doi.org/10.1155/2012/728398

Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding

Autor: Steven A. Thompson, Wei Chen, Reetal Pai, Wesley Marchione, Thomas W. Greene, Hanneke Witsenboer, Ruihua Ren, Siva P. Kumpatla, Jafar Mammadov, Feyruz Yalcin

Publikováno v: Theoretical and Applied Genetics. 121:577-588

The duplicated and the highly repetitive nature of the maize genome has historically impeded the development of true single nucleotide polymorphism (SNP) markers in this crop. Recent advances in genome complexity reduction methods coupled with sequen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae15966623a2b29a7322429a93d4119d
https://doi.org/10.1007/s00122-010-1331-8

Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean

Autor: Carine Ameline-Torregrosa, Roxanne Denny, Majesta O'Bleness, Ashley Nguyen, Roger W. Innes, Sue Sherman-Broyles, Béatrice Segurens, Jeff J. Doyle, Jing Yi, Christian S. Hans, Valérie Geffroy, Hongshing Lai, Stacy Howell, Michelle Metcalf, Adam Wawrzynski, Anita Dalwani, Nicolas W.G. Chen, Ethalinda K. S. Cannon, Ben Chacko, Arnaud Couloux, Tom Ashfield, Scott A. Jackson, Nevin D. Young, Milind B. Ratnaparkhe, Daniel C. Ilut, Sylvie Samain, Jafar Mammadov, Bruce A. Roe, Bernard E. Pfeil, Shweta Deshpande, Ram Podicheti, Mireille Sévignac, Natasha Glover, Ashley N. Egan, Steven B. Cannon, Sara E. Martin del Campo, M. A. Saghai Maroof, Jason G. Walling, Iryna Sanders, Dominic M. Tucker, Vincent Thareau

Publikováno v: Plant Physiology. 148:1740-1759

The genomes of most, if not all, flowering plants have undergone whole genome duplication events during their evolution. The impact of such polyploidy events is poorly understood, as is the fate of most duplicated genes. We sequenced an approximately

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a1d6dc18d9f627e47bd3760d5c3a0d11
https://doi.org/10.1104/pp.108.127902