Zobrazeno 1 - 10
of 38
pro vyhledávání: '"Jaclyn N Taroni"'
Autor:
Jineta Banerjee, Robert J Allaway, Jaclyn N Taroni, Aaron Baker, Xiaochun Zhang, Chang In Moon, Christine A Pratilas, Jaishri O Blakeley, Justin Guinney, Angela Hirbe, Casey S Greene, Sara JC Gosline
Publikováno v:
Genes, Vol 11, Iss 2, p 226 (2020)
Neurofibromatosis type 1 (NF1) is a monogenic syndrome that gives rise to numerous symptoms including cognitive impairment, skeletal abnormalities, and growth of benign nerve sheath tumors. Nearly all NF1 patients develop cutaneous neurofibromas (cNF
Externí odkaz:
https://doaj.org/article/550fc95c2e064b029a7e537be2da84c2
Publikováno v:
Communications Biology, Vol 6, Iss 1, Pp 1-10 (2023)
An evaluation of normalization methods shows that it is possible to combine microarray and RNA-seq data for machine learning applications.
Externí odkaz:
https://doaj.org/article/ade4ec9e738148ab86a6427b611b0dbc
Autor:
Mai T. Dang, Michael V. Gonzalez, Krutika S. Gaonkar, Komal S. Rathi, Patricia Young, Sherjeel Arif, Li Zhai, Zahidul Alam, Samir Devalaraja, Tsun Ki Jerrick To, Ian W. Folkert, Pichai Raman, Jo Lynne Rokita, Daniel Martinez, Jaclyn N. Taroni, Joshua A. Shapiro, Casey S. Greene, Candace Savonen, Fernanda Mafra, Hakon Hakonarson, Tom Curran, Malay Haldar
Publikováno v:
Cell Reports, Vol 42, Iss 6, Pp 112600- (2023)
Externí odkaz:
https://doaj.org/article/bbaece0aa488485191eb808eec60fb37
Autor:
Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni, Vincent J. Carey, Casey S. Greene, Levi Waldron, Sean Davis
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-10 (2022)
Many transcriptomic profiles have been deposited in public archives but are underused for the interpretation of experiments. Here the authors report GenomicSuperSignature for interpreting new transcriptomic datasets through comparison to public archi
Externí odkaz:
https://doaj.org/article/e7c9a9b82ea740e0a1f1e47256b18223
Autor:
Jineta Banerjee, Jaclyn N. Taroni, Robert J. Allaway, Deepashree Venkatesh Prasad, Justin Guinney, Casey Greene
Publikováno v:
Nature Methods.
Autor:
Candace L. Savonen, Tsun Ki Jerrick To, Jo Lynne Rokita, Komal S. Rathi, Patricia Young, Joshua A. Shapiro, Pichai Raman, Fernanda Abani Mafra, Li Zhai, Tom Curran, Michael Gonzalez, Mai T. Dang, Malay Haldar, Casey S. Greene, Samir Devalaraja, Zahidul Alam, Jaclyn N. Taroni, Hakon Hakonarson, Daniel Martinez, Krutika S. Gaonkar, Sherjeel Arif, Ian W. Folkert
Publikováno v:
Cell Reports, Vol 34, Iss 13, Pp 108917-(2021)
Summary Tumor-associated macrophages (TAMs) play an important role in tumor immunity and comprise of subsets that have distinct phenotype, function, and ontology. Transcriptomic analyses of human medulloblastoma, the most common malignant pediatric b
Autor:
Joshua A. Shapiro, Krutika S. Gaonkar, Stephanie J. Spielman, Candace L. Savonen, Chante J. Bethell, Run Jin, Komal S. Rathi, Yuankun Zhu, Laura E. Egolf, Bailey K. Farrow, Daniel P. Miller, Yang Yang, Tejaswi Koganti, Nighat Noureen, Mateusz P. Koptyra, Nhat Duong, Mariarita Santi, Jung Kim, Shannon Robins, Phillip B. Storm, Stephen C. Mack, Jena V. Lilly, Hongbo M. Xie, Payal Jain, Pichai Raman, Brian R. Rood, Rishi R. Lulla, Javad Nazarian, Adam A. Kraya, Zalman Vaksman, Allison P. Heath, Cassie Kline, Laura Scolaro, Angela N. Viaene, Xiaoyan Huang, Gregory P. Way, Steven M. Foltz, Bo Zhang, Anna R. Poetsch, Sabine Mueller, Brian M. Ennis, Michael Prados, Sharon J. Diskin, Siyuan Zheng, Yiran Guo, Shrivats Kannan, Angela J. Waanders, Ashley S. Margol, Meen Chul Kim, Derek Hanson, Nicholas Van Kuren, Jessica Wong, Rebecca S. Kaufman, Noel Coleman, Christopher Blackden, Kristina A. Cole, Jennifer L. Mason, Peter J. Madsen, Carl J. Koschmann, Douglas R. Stewart, Eric Wafula, Miguel A. Brown, Adam C. Resnick, Casey S. Greene, Jo Lynne Rokita, Jaclyn N. Taroni
Publikováno v:
Cell Genomics. :100340
Autor:
Nicholas A. Chimicles, John M. Maris, Phillip B. Storm, Adam C. Resnick, Miguel A. Brown, Jaclyn N. Taroni, Federico Marini, Krutika S. Gaonkar, Pichai Raman, Ammar S. Naqvi, Bo Zhang, Yuankun Zhu, Konstantin Strauch, Jo Lynne Rokita, Payal Jain, Komal S. Rathi
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-21 (2020)
BMC Bioinformatics
BMC Bioinformatics
Background Gene fusion events are significant sources of somatic variation across adult and pediatric cancers and are some of the most clinically-effective therapeutic targets, yet low consensus of RNA-Seq fusion prediction algorithms makes therapeut
Autor:
Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni, Vincent Carey, Casey Greene, Levi Waldron, Sean Davis
Millions of transcriptomic profiles have been deposited in public archives, yet remain underused for the interpretation of new experiments. We present a novel method for interpreting new transcriptomic datasets through near-instantaneous comparison t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::aaefbcc174ede7e9f643c2513c3cd070
https://doi.org/10.1101/2021.05.26.445900
https://doi.org/10.1101/2021.05.26.445900
Autor:
Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni, Vincent J. Carey, Casey S. Greene, Levi Waldron, Sean Davis
Publikováno v:
Nature communications. 13(1)
Millions of transcriptomic profiles have been deposited in public archives, yet remain underused for the interpretation of new experiments. We present a method for interpreting new transcriptomic datasets through instant comparison to public datasets