Zobrazeno 1 - 10
of 55
pro vyhledávání: '"Jaclyn N Taroni"'
Publikováno v:
Communications Biology, Vol 6, Iss 1, Pp 1-10 (2023)
An evaluation of normalization methods shows that it is possible to combine microarray and RNA-seq data for machine learning applications.
Externí odkaz:
https://doaj.org/article/ade4ec9e738148ab86a6427b611b0dbc
Autor:
Mai T. Dang, Michael V. Gonzalez, Krutika S. Gaonkar, Komal S. Rathi, Patricia Young, Sherjeel Arif, Li Zhai, Zahidul Alam, Samir Devalaraja, Tsun Ki Jerrick To, Ian W. Folkert, Pichai Raman, Jo Lynne Rokita, Daniel Martinez, Jaclyn N. Taroni, Joshua A. Shapiro, Casey S. Greene, Candace Savonen, Fernanda Mafra, Hakon Hakonarson, Tom Curran, Malay Haldar
Publikováno v:
Cell Reports, Vol 42, Iss 6, Pp 112600- (2023)
Externí odkaz:
https://doaj.org/article/bbaece0aa488485191eb808eec60fb37
Autor:
Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni, Vincent J. Carey, Casey S. Greene, Levi Waldron, Sean Davis
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-10 (2022)
Many transcriptomic profiles have been deposited in public archives but are underused for the interpretation of experiments. Here the authors report GenomicSuperSignature for interpreting new transcriptomic datasets through comparison to public archi
Externí odkaz:
https://doaj.org/article/e7c9a9b82ea740e0a1f1e47256b18223
Autor:
Krutika S. Gaonkar, Federico Marini, Komal S. Rathi, Payal Jain, Yuankun Zhu, Nicholas A. Chimicles, Miguel A. Brown, Ammar S. Naqvi, Bo Zhang, Phillip B. Storm, John M. Maris, Pichai Raman, Adam C. Resnick, Konstantin Strauch, Jaclyn N. Taroni, Jo Lynne Rokita
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-21 (2020)
Abstract Background Gene fusion events are significant sources of somatic variation across adult and pediatric cancers and are some of the most clinically-effective therapeutic targets, yet low consensus of RNA-Seq fusion prediction algorithms makes
Externí odkaz:
https://doaj.org/article/b17c2203e9b546a2b0b10ad745481e80
Autor:
Mai T. Dang, Michael V. Gonzalez, Krutika S. Gaonkar, Komal S. Rathi, Patricia Young, Sherjeel Arif, Li Zhai, Zahidul Alam, Samir Devalaraja, Tsun Ki Jerrick To, Ian W. Folkert, Pichai Raman, Jo Lynne Rokita, Daniel Martinez, Jaclyn N. Taroni, Joshua A. Shapiro, Casey S. Greene, Candace Savonen, Fernanda Mafra, Hakon Hakonarson, Tom Curran, Malay Haldar
Publikováno v:
Cell Reports, Vol 34, Iss 13, Pp 108917- (2021)
Summary: Tumor-associated macrophages (TAMs) play an important role in tumor immunity and comprise of subsets that have distinct phenotype, function, and ontology. Transcriptomic analyses of human medulloblastoma, the most common malignant pediatric
Externí odkaz:
https://doaj.org/article/a2627ce3842241f69fb16cdb85a0a063
Autor:
Jineta Banerjee, Jaclyn N. Taroni, Robert J. Allaway, Deepashree Venkatesh Prasad, Justin Guinney, Casey Greene
Publikováno v:
Nature Methods.
Autor:
Jaclyn N. Taroni
Publikováno v:
mSystems, Vol 4, Iss 4 (2019)
ABSTRACT Microbiology, like many areas of life science research, is increasingly data-intensive. As such, bioinformatics and data science skills have become essential to leverage microbiome sequencing data for discovery. Short intensive courses have
Externí odkaz:
https://doaj.org/article/a3a6acea625a4edd9f9ffffd24f827ee
Autor:
Candace L. Savonen, Tsun Ki Jerrick To, Jo Lynne Rokita, Komal S. Rathi, Patricia Young, Joshua A. Shapiro, Pichai Raman, Fernanda Abani Mafra, Li Zhai, Tom Curran, Michael Gonzalez, Mai T. Dang, Malay Haldar, Casey S. Greene, Samir Devalaraja, Zahidul Alam, Jaclyn N. Taroni, Hakon Hakonarson, Daniel Martinez, Krutika S. Gaonkar, Sherjeel Arif, Ian W. Folkert
Publikováno v:
Cell Reports, Vol 34, Iss 13, Pp 108917-(2021)
Summary Tumor-associated macrophages (TAMs) play an important role in tumor immunity and comprise of subsets that have distinct phenotype, function, and ontology. Transcriptomic analyses of human medulloblastoma, the most common malignant pediatric b
Autor:
Joshua A. Shapiro, Krutika S. Gaonkar, Stephanie J. Spielman, Candace L. Savonen, Chante J. Bethell, Run Jin, Komal S. Rathi, Yuankun Zhu, Laura E. Egolf, Bailey K. Farrow, Daniel P. Miller, Yang Yang, Tejaswi Koganti, Nighat Noureen, Mateusz P. Koptyra, Nhat Duong, Mariarita Santi, Jung Kim, Shannon Robins, Phillip B. Storm, Stephen C. Mack, Jena V. Lilly, Hongbo M. Xie, Payal Jain, Pichai Raman, Brian R. Rood, Rishi R. Lulla, Javad Nazarian, Adam A. Kraya, Zalman Vaksman, Allison P. Heath, Cassie Kline, Laura Scolaro, Angela N. Viaene, Xiaoyan Huang, Gregory P. Way, Steven M. Foltz, Bo Zhang, Anna R. Poetsch, Sabine Mueller, Brian M. Ennis, Michael Prados, Sharon J. Diskin, Siyuan Zheng, Yiran Guo, Shrivats Kannan, Angela J. Waanders, Ashley S. Margol, Meen Chul Kim, Derek Hanson, Nicholas Van Kuren, Jessica Wong, Rebecca S. Kaufman, Noel Coleman, Christopher Blackden, Kristina A. Cole, Jennifer L. Mason, Peter J. Madsen, Carl J. Koschmann, Douglas R. Stewart, Eric Wafula, Miguel A. Brown, Adam C. Resnick, Casey S. Greene, Jo Lynne Rokita, Jaclyn N. Taroni
Publikováno v:
Cell Genomics. :100340
Autor:
Nicholas A. Chimicles, John M. Maris, Phillip B. Storm, Adam C. Resnick, Miguel A. Brown, Jaclyn N. Taroni, Federico Marini, Krutika S. Gaonkar, Pichai Raman, Ammar S. Naqvi, Bo Zhang, Yuankun Zhu, Konstantin Strauch, Jo Lynne Rokita, Payal Jain, Komal S. Rathi
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-21 (2020)
BMC Bioinformatics
BMC Bioinformatics
Background Gene fusion events are significant sources of somatic variation across adult and pediatric cancers and are some of the most clinically-effective therapeutic targets, yet low consensus of RNA-Seq fusion prediction algorithms makes therapeut