Drought and recovery in barley: key gene networks and retrotransposon response

Autor: Maitry Paul, Jaakko Tanskanen, Marko Jääskeläinen, Wei Chang, Ahan Dalal, Menachem Moshelion, Alan H. Schulman

Publikováno v: Frontiers in Plant Science, Vol 14 (2023)

IntroductionDuring drought, plants close their stomata at a critical soil water content (SWC), together with making diverse physiological, developmental, and biochemical responses.MethodsUsing precision-phenotyping lysimeters, we imposed pre-flowerin

Externí odkaz: https://doaj.org/article/90e550f29b724fa8b738e8fd5b12efde

The giant diploid faba genome unlocks variation in a global protein crop

Autor: Murukarthick Jayakodi, Agnieszka A. Golicz, Jonathan Kreplak, Lavinia I. Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphaël Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W. Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O. Warsame, Alexander H. J. Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Doležel, Liisa U. Holm, Luc L. Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J. Snowdon, Nils Stein, Frederick L. Stoddard, Jens Stougaard, Nadim Tayeh, Ana M. Torres, Björn Usadel, Ingo Schubert, Donal Martin O’Sullivan, Alan H. Schulman, Stig Uggerhøj Andersen

Publikováno v: Jayakodi, M, Golicz, A A, Kreplak, J, Fechete, L I, Angra, D, Bednář, P, Bornhofen, E, Zhang, H, Boussageon, R, Kaur, S, Cheung, K, Čížková, J, Gundlach, H, Hallab, A, Imbert, B, Keeble-Gagnère, G, Koblížková, A, Kobrlová, L, Krejčí, P, Mouritzen, T W, Neumann, P, Nadzieja, M, Nielsen, L K, Novák, P, Orabi, J, Padmarasu, S, Robertson-Shersby-Harvie, T, Robledillo, L Á, Schiemann, A, Tanskanen, J, Törönen, P, Warsame, A O, Wittenberg, A H J, Himmelbach, A, Aubert, G, Courty, P-E, Doležel, J, Holm, L U, Janss, L L, Khazaei, H, Macas, J, Mascher, M, Smýkal, P, Snowdon, R J, Stein, N, Stoddard, F L, Stougaard, J, Tayeh, N, Torres, A M, Usadel, B, Schubert, I, O'Sullivan, D M, Schulman, A H & Andersen, S U 2023, ' The giant diploid faba genome unlocks variation in a global protein crop ', Nature, vol. 615, no. 7953, pp. 652-659 . https://doi.org/10.1038/s41586-023-05791-5
Nature 615(7953), 652-659 (2023). doi:10.1038/s41586-023-05791-5
Natureevents directory, 615(7953):652-659

Increasing the proportion of locally produced plant protein in currently meat-rich diets could substantially reduce greenhouse gas emissions and loss of biodiversity1. However, plant protein production is hampered by the lack of a cool-season legume

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::86317860227337f9a4ae7cefe8dda0ff
https://pure.au.dk/portal/da/publications/the-giant-diploid-faba-genome-unlocks-variation-in-a-global-protein-crop(97e8d652-935b-4a73-b127-019025997e6d).html

Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map

Autor: Olli-Pekka Smolander, Daniel Blande, Virpi Ahola, Pasi Rastas, Jaakko Tanskanen, Juhana I Kammonen, Vicencio Oostra, Lorenzo Pellegrini, Suvi Ikonen, Tad Dallas, Michelle F DiLeo, Anne Duplouy, Ilhan Cem Duru, Pauliina Halimaa, Aapo Kahilainen, Suyog S Kuwar, Sirpa O Kärenlampi, Elvira Lafuente, Shiqi Luo, Jenny Makkonen, Abhilash Nair, Maria de la Paz Celorio-Mancera, Ville Pennanen, Annukka Ruokolainen, Tarja Sundell, Arja I Tervahauta, Victoria Twort, Erik van Bergen, Janina Österman-Udd, Lars Paulin, Mikko J Frilander, Petri Auvinen, Marjo Saastamoinen

Publikováno v: GigaScience

BackgroundThe Glanville fritillary (Melitaea cinxia) butterfly is a model system for metapopulation dynamics research in fragmented landscapes. Here, we provide a chromosome-level assembly of the butterfly's genome produced from Pacific Biosciences s

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17a82789b0be822b30817110d3473081
http://hdl.handle.net/10138/341874

Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map

Autor: Twort, Pasi Rastas, Elvira Lafuente, Annukka Ruokolainen, de la Paz Celorio-Mancera M, Lars Paulin, Pennanen, Aapo Kahilainen, Oostra, Shiqi Luo, Pauliina Halimaa, Arja Tervahauta, Makkonen J, Juhana Kammonen, Suvi Ikonen, Marjo Saastamoinen, Österman-Udd J, Abhilash Nair, Blande D, Olli-Pekka Smolander, Tarja Sundell, Sirpa Kärenlampi, Michelle F. DiLeo, Pellegrini L, Jaakko Tanskanen, Suyog S. Kuwar, Ahola, Mikko J. Frilander, Petri Auvinen, Tad A. Dallas, Anne Duplouy, Cem Duru I, van Bergen E

The Glanville fritillary (Melitaea cinxia) butterfly is a long-term model system for metapopulation dynamics research in fragmented landscapes. Here, we provide a chromosome level assembly of the butterfly’s genome produced from Pacific Biosciences

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::c514ebe73b6a9a83f469a8aa57a4e57e
https://doi.org/10.1101/2020.11.03.364950

The genome of cowpea ( Vigna unguiculata [L.] Walp.)

Autor: Samuel Hokin, Steven B. Cannon, Tingting Zhu, Jansen R. P. Santos, Sassoum Lo, Jerome Verdier, María Muñoz-Amatriaín, Shengqiang Shu, Qihua Liang, Timothy J. Close, Abid Hasan, Arsenio Ndeve, Steve Wanamaker, Jaroslav Doležel, Hind Alhakami, Andrew Farmer, Alan H. Schulman, Philip A. Roberts, Stefano Lonardi, Jan Vrána, Jaakko Tanskanen, Rachid Ounit, Ming-Cheng Luo

Publikováno v: Plant Journal
Plant Journal, Wiley, 2019, 98 (5), pp.767-782. ⟨10.1111/tpj.14349⟩
Plant Journal, Wiley, 2019, 98 (5), pp.767-782. ⟨10.1101/518969⟩
The Plant Journal
Plant Journal 5 (98), 767-782. (2019)
The Plant journal : for cell and molecular biology, vol 98, iss 5
Plant Journal, 2019, 98 (5), pp.767-782. ⟨10.1111/tpj.14349⟩

Summary Cowpea (Vigna unguiculata [L.] Walp.) is a major crop for worldwide food and nutritional security, especially in sub‐Saharan Africa, that is resilient to hot and drought‐prone environments. An assembly of the single‐haplotype inbred gen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2b8916f6b53493c45e4cd030fb63bdc
https://hal.archives-ouvertes.fr/hal-02449486