Zobrazeno 1 - 10
of 305
pro vyhledávání: '"J.-M. Lang"'
Autor:
William M. Dawson, Eric J. M. Lang, Guto G. Rhys, Kathryn L. Shelley, Christopher Williams, R. Leo Brady, Matthew P. Crump, Adrian J. Mulholland, Derek N. Woolfson
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
So far most of the de novo designed proteins are for single states only. Here, the authors present the de novo design and crystal structure determination of a coiled-coil peptide that assembles into multiple, distinct conformational states under the
Externí odkaz:
https://doaj.org/article/da6fbe49cbb74470820dc44739bd5079
Autor:
Guto G. Rhys, Christopher W. Wood, Eric J. M. Lang, Adrian J. Mulholland, R. Leo Brady, Andrew R. Thomson, Derek N. Woolfson
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-12 (2018)
Higher order coiled coils with five or more helices can form α-helical barrels. Here the authors show that placing β-branched aliphatic residues along the lumen yields stable and open α-helical barrels, which is of interest for the rational design
Externí odkaz:
https://doaj.org/article/5c02c52e40f94c5bb66b86f6007891f4
Publikováno v:
Lang, E J M, Baker, E G, Woolfson, D N & Mulholland, A J 2022, ' Generalized Born Implicit Solvent Models Do Not Reproduce Secondary Structures of De Novo Designed Glu/Lys Peptides ', Journal of Chemical Theory and Computation, vol. 18, no. 7, pp. 4070−4076 . https://doi.org/10.1021/acs.jctc.1c01172
We test a range of standard generalized Born (GB) models and protein force fields for a set of five experimentally characterized, designed peptides comprising alternating blocks of glutamate and lysine, which have been shown to differ significantly i
Autor:
Silvia Gervasoni, Eric J. M. Lang, Adrian J. Mulholland, Reynier Suardíaz, James Spencer, Charlotte K. Colenso, Zongfan Yang, Rebecca M. Twidale
Publikováno v:
Yang, Z, Twidale, R M, Gervasoni, S, Suardíaz, R, Colenso, C K, Lang, E J M, Spencer, J & Mulholland, A J 2021, ' Multiscale Workflow for Modeling Ligand Complexes of Zinc Metalloproteins ', Journal of Chemical Information and Modeling, vol. 61, no. 11, pp. 5658-5672 . https://doi.org/10.1021/acs.jcim.1c01109
Zinc metalloproteins are ubiquitous, with protein zinc centers of structural and functional importance, involved in interactions with ligands and substrates and often of pharmacological interest. Biomolecular simulations are increasingly prominent in
Autor:
Kozhinjampara R. Mahendran, William M. Dawson, Mark I. Wallace, Jason T. Sengel, Adrian J. Mulholland, William F. DeGrado, Hagan Bayley, Lijun Liu, R. Leo Brady, Eric J. M. Lang, Ai Niitsu, Alistair J. Scott, Derek N. Woolfson, Marco Mravic, Andrew R. Thomson, Huong T. Kratochvil
Publikováno v:
Scott, A J, Niitsu, A, Lang, E J M, Dawson, W M, Brady, R L, Mulholland, A J & Woolfson, D N 2021, ' Constructing ion channels from water-soluble α-helical barrels ', Nature Chemistry, vol. 13, no. 7, pp. 643-650 . https://doi.org/10.1038/s41557-021-00688-0
The design of peptides that assemble in membranes to form functional ion channels is challenging. Specifically, hydrophobic interactions must be designed between the peptides and at the peptide–lipid interfaces simultaneously. Here, we take a multi
Autor:
Kenneth R. Olson, J. M. Lang
Publikováno v:
Open Journal of Soil Science. 11:538-566
Historic Native American and modern civilizations have been forcing the unstable use of the Colorado River and adjacent land resources for centuries. Much can be learned from past Native American cultures that created irrigation systems to offset low
Autor:
J. M. Lang, Kenneth R. Olson
Publikováno v:
Open Journal of Soil Science. 10:410-442
The physical, chemical and biological attributes of the Yukon River and tributary basins impact soil erosion, sediment transport and sediment delivery. The glacier, snow and permafrost melting, runoff, erosion, transport, deposition and storage of gr
Autor:
R. C. Huber, D. M. Dattelbaum, J. M. Lang, Joshua D. Coe, J. H. Peterson, B. Bartram, L. L. Gibson
Publikováno v:
Journal of Applied Physics. 133:035106
We performed a series of six plate impact experiments on polyimide and modeled them using new reactant and products equations of state combined with an Arrhenius rate model. The first experiment was diagnosed with embedded electromagnetic velocity ga
We test a range of standard implicit solvent models and protein forcefields for a set of 5 experimentally characterized, designed α-helical peptides. 65 combinations of forcefield and implicit solvent models are evaluated in >800 µs of molecular dy
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::15093d2c8e58e884e819d9e29799ad41
https://doi.org/10.26434/chemrxiv-2021-1x2zl
https://doi.org/10.26434/chemrxiv-2021-1x2zl
Autor:
Christopher Williams, William M. Dawson, Adrian J. Mulholland, Matthew P. Crump, R. Leo Brady, Eric J. M. Lang, Kathryn L Shelley, Guto G. Rhys, Derek N. Woolfson
Publikováno v:
Nature Communications
Dawson, W M, Lang, E J M, Rhys, G G, Shelley, K L, Williams, C, Brady, R L, Crump, M P, Mulholland, A J & Woolfson, D N 2021, ' Structural resolution of switchable states of a de novo peptide assembly ', Nature Communications, vol. 12, no. 1, 1530 (2020) . https://doi.org/10.1038/s41467-021-21851-8
Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
Dawson, W M, Lang, E J M, Rhys, G G, Shelley, K L, Williams, C, Brady, R L, Crump, M P, Mulholland, A J & Woolfson, D N 2021, ' Structural resolution of switchable states of a de novo peptide assembly ', Nature Communications, vol. 12, no. 1, 1530 (2020) . https://doi.org/10.1038/s41467-021-21851-8
Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
De novo protein design is advancing rapidly. However, most designs are for single states. Here we report a de novo designed peptide that forms multiple α-helical-bundle states that are accessible and interconvertible under the same conditions. Usual