Zobrazeno 1 - 10
of 80
pro vyhledávání: '"J. van Eerden"'
Autor:
Tina Lusiany, Tohru Terada, Jun-ichi Kishikawa, Mika Hirose, David Virya Chen, Fuminori Sugihara, Hendra Saputra Ismanto, Floris J. van Eerden, Songling Li, Takayuki Kato, Hisashi Arase, Matsuura Yoshiharu, Masato Okada, Daron M. Standley
Publikováno v:
Viruses, Vol 15, Iss 12, p 2421 (2023)
The entry of SARS-CoV-2 into host cells is mediated by the interaction between the spike receptor-binding domain (RBD) and host angiotensin-converting enzyme 2 (ACE2). Certain human antibodies, which target the spike N-terminal domain (NTD) at a dist
Externí odkaz:
https://doaj.org/article/a2bc4d0f90d141fcb503218b93aede7c
Autor:
Shunsuke Teraguchi, Dianita S. Saputri, Mara Anais Llamas-Covarrubias, Ana Davila, Diego Diez, Sedat Aybars Nazlica, John Rozewicki, Hendra S. Ismanto, Jan Wilamowski, Jiaqi Xie, Zichang Xu, Martin de Jesus Loza-Lopez, Floris J. van Eerden, Songling Li, Daron M. Standley
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 2000-2011 (2020)
B cell receptors (BCRs) and T cell receptors (TCRs) make up an essential network of defense molecules that, collectively, can distinguish self from non-self and facilitate destruction of antigen-bearing cells such as pathogens or tumors. The analysis
Externí odkaz:
https://doaj.org/article/ce9023388cc0442e936ebfd25aab17a2
Autor:
Dianita S. Saputri, Songling Li, Floris J. van Eerden, John Rozewicki, Zichang Xu, Hendra S. Ismanto, Ana Davila, Shunsuke Teraguchi, Kazutaka Katoh, Daron M. Standley
Publikováno v:
Frontiers in Microbiology, Vol 11 (2020)
The SARS-CoV-2 S protein is a major point of interaction between the virus and the human immune system. As a consequence, the S protein is not a static target but undergoes rapid molecular evolution. In order to more fully understand the selection pr
Externí odkaz:
https://doaj.org/article/40c3dbf7ef7c472381fc38d67246e99f
Autor:
Floris J. Van Eerden, Manuel N. Melo, Pim W. J. M. Frederix, Xavier Periole, Siewert J. Marrink
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-8 (2017)
Plastoquinone (PLQ) shuttles electrons between photosystem II (PSII) and cytochrome b6f. Here the authors perform molecular dynamics simulations and propose that PLQ enters the exchange cavity of PSII by a promiscuous diffusion mechanism whereby thre
Externí odkaz:
https://doaj.org/article/c72b1647cfcc4e2cba0da0c780ff9ca6
Autor:
Taiichiro Shirai, Akiko Nakai, Emiko Ando, Jun Fujimoto, Sarah Leach, Takao Arimori, Daisuke Higo, Floris J. van Eerden, Janyerkye Tulyeu, Yu-Chen Liu, Daisuke Okuzaki, Masanori A. Murayama, Haruhiko Miyata, Kazuto Nunomura, Bangzhong Lin, Akiyoshi Tani, Atsushi Kumanogoh, Masahito Ikawa, James B. Wing, Daron M. Standley, Junichi Takagi, Kazuhiro Suzuki
Publikováno v:
Science Immunology. 8
Celastrol, a bioactive molecule extracted from the Tripterygium wilfordii plant, has been shown to exhibit anti-inflammatory properties. However, its mechanism of action has not been fully elucidated. Here, we show that celastrol suppresses humoral i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c565e462a96e08c5e2265443a5aa5546
https://doi.org/10.1126/sciimmunol.adc9324
https://doi.org/10.1126/sciimmunol.adc9324
Autor:
Floris J. van Eerden, Aalaa Alrahman Sherif, Mara Anais Llamas-Covarrubias, Arthur Millius, Xiuyuan Lu, Shigenari Ishizuka, Sho Yamasaki, Daron M. Standley
In this study, we present an allosteric mechanism for T cell receptor (TCR) triggering upon binding a peptide-MHC complex (pMHC), in which a conformational change in the TCR upon pMHC binding controls the mobility of the CD3 proteins. We found that t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::705a26735daa375818ee98e3d28456ac
https://doi.org/10.1101/2022.07.27.501668
https://doi.org/10.1101/2022.07.27.501668
Autor:
Floris J. van Eerden, Aalaa Alrahman Sherif, Mara Anais Llamas-Covarrubias, Daron M. Standley
Publikováno v:
Biophysical Journal. 122:187a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::641202f5a611a6c54f6c65261df3765e
https://doi.org/10.1016/j.bpj.2022.11.1148
https://doi.org/10.1016/j.bpj.2022.11.1148
Autor:
John Rozewicki, Floris J. van Eerden, Jan Wilamowski, Shunsuke Teraguchi, Diego Diez, Ana Davila, Martin J. Loza-Lopez, Hendra S. Ismanto, Jiaqi Xie, Sedat Aybars Nazlica, Dianita S. Saputri, Daron M. Standley, Mara Anaís Llamas-Covarrubias, Zichang Xu, Songling Li
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 2000-2011 (2020)
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal
Graphical abstract
B cell receptors (BCRs) and T cell receptors (TCRs) make up an essential network of defense molecules that, collectively, can distinguish self from non-self and facilitate destruction of antigen-bearing cells such as pathogens
B cell receptors (BCRs) and T cell receptors (TCRs) make up an essential network of defense molecules that, collectively, can distinguish self from non-self and facilitate destruction of antigen-bearing cells such as pathogens
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9eb1aa183dae4da779df8423ba7be727
https://pubmed.ncbi.nlm.nih.gov/32802272
https://pubmed.ncbi.nlm.nih.gov/32802272
Autor:
Mikkel Christensen, Frauke Gräter, Talia Zeppelin, Ana-Nicoleta Bondar, Camilo Aponte-Santamaría, Kevin J. Boyd, Carmen Domene, Peter Pohl, Pedro A. Fernandes, Lucia Sessa, Birgit Schiøtt, Maria J. Ramos, Siewert J. Marrink, Durba Sengupta, Konstantina Karathanou, M. Joanne Lemieux, Peter J. Quinn, Ran Friedman, Csaba Daday, Mónica Pickholz, Stefano Piotto, Fabian Keller, Davit Hakobyan, Valeria Zoni, Syma Khalid, Floris J. van Eerden, Stefano Vanni, Eric R. May, Andreas Heuer, João Coimbra, Marlon Becker, Richard J. Naftalin, Antara Mazumdar, Elena Arutyunova, Simona Concilio
Publikováno v:
Friedman, R, Khalid, S, Aponte-Santamaría, C, Arutyunova, E, Becker, M, Boyd, K J, Christensen, M H, Coimbra, J T S, Concilio, S, Daday, C, van Eerden, F J, Fernandes, P A, Gräter, F, Hakobyan, D, Heuer, A, Karathanou, K, Keller, F, Lemieux, M J, Marrink, S J, May, E R, Mazumdar, A, Naftalin, R, Pickholz, M, Piotto, S, Pohl, P, Quinn, P, Ramos, M J, Schiøtt, B, Sengupta, D, Sessa, L, Vanni, S, Zeppelin, T, Zoni, V, Bondar, A N & Domene, C 2018, ' Understanding Conformational Dynamics of Complex Lipid Mixtures Relevant to Biology ', Journal of Membrane Biology, vol. 251, no. 5-6, pp. 609-631 . https://doi.org/10.1007/s00232-018-0050-y
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
The Journal of Membrane Biology
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
The Journal of Membrane Biology
This is a perspective article entitled “Frontiers in computational biophysics: understanding conformational dynamics of complex lipid mixtures relevant to biology” which is following a CECAM meeting with the same name. Fil: Friedman, Ran. Linnæu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::06d5c9e68c7426479035d0f27af9de39
https://hdl.handle.net/11370/358e5f81-077d-43c5-9ee5-4121558e6b5b
https://hdl.handle.net/11370/358e5f81-077d-43c5-9ee5-4121558e6b5b
Autor:
Berend Poolman, Floris J. van Eerden, Christoffer Åberg, Siewert J. Marrink, Arnold J. Boersma, Boqun Liu
Publikováno v:
Biophysical Journal
Biophysical Journal, 112(9), 1929-1939. CELL PRESS
Biophysical Journal, 112(9), 1929-1939. CELL PRESS
Cells are highly crowded with proteins and polynucleotides. Any reaction that depends on the available volume can be affected by macromolecular crowding, but the effects of crowding in cells are complex and difficult to track. Here, we present a set
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d787ed2c7d9a6ce86d84118eef86486b
https://doi.org/10.1016/j.bpj.2017.04.004
https://doi.org/10.1016/j.bpj.2017.04.004