Zobrazeno 1 - 10
of 114
pro vyhledávání: '"J. Peter Gogarten"'
Publikováno v:
STAR Protocols, Vol 4, Iss 4, Pp 102733- (2023)
Summary: Agent-based models are composed of individual agents coded for traits, such as cooperation and cheating, that interact in a virtual world based on defined rules. Here, we describe the use of an agent-based model of homologous recombination i
Externí odkaz:
https://doaj.org/article/df19652d71fb4c9cb9c2082c3cc555d8
Publikováno v:
iScience, Vol 26, Iss 8, Pp 107344- (2023)
Summary: Prosocial behavior is ubiquitous in nature despite the relative fitness costs carried by cooperative individuals. However, the stability of cooperation in populations is fragile and often maintained through enforcement. We propose that homol
Externí odkaz:
https://doaj.org/article/abfcaf71ba6e4bbe8721ad25472aedea
Autor:
Andrea M. Makkay, Artemis S. Louyakis, Nikhil Ram-Mohan, Uri Gophna, J. Peter Gogarten, R. Thane Papke
Publikováno v:
Scientific Reports, Vol 10, Iss 1, Pp 1-16 (2020)
Abstract Horizontal gene transfer is a means by which bacteria, archaea, and eukaryotes are able to trade DNA within and between species. While there are a variety of mechanisms through which this genetic exchange can take place, one means prevalent
Externí odkaz:
https://doaj.org/article/8c2fd9ed0dbf4cc5a0e45f10c78966ae
Autor:
Sophie M. Colston, Matthew S. Fullmer, Lidia Beka, Brigitte Lamy, J. Peter Gogarten, Joerg Graf
Publikováno v:
mBio, Vol 5, Iss 6 (2014)
ABSTRACT Prokaryotic taxonomy is the underpinning of microbiology, as it provides a framework for the proper identification and naming of organisms. The “gold standard” of bacterial species delineation is the overall genome similarity determined
Externí odkaz:
https://doaj.org/article/51cdc698764b491b8b04badb8c7559d7
Publikováno v:
Trends in ecologyevolution. 37(3)
Cooperation exists across all scales of biological organization, from genetic elements to complex human societies. Bacteria cooperate by secreting molecules that benefit all individuals in the population (i.e., public goods). Genes associated with co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::38d98becb14e6ffb376896d7479d5af5
https://pubmed.ncbi.nlm.nih.gov/34815098
https://pubmed.ncbi.nlm.nih.gov/34815098
Additional file 3: Accession numbers for sequences used in protein alignment. Lists of accession numbers for each protein used for each conservation profile. (DOC 212 KB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2050aac6e43d50720496e47113719852
Additional file 2: List of Introns found in Cytochrome C oxidase subunit I. The list contains all introns from species for which at least one of their cox1 gene introns were BLAST hits when introns from Podospora anserina (X55026) and Saccharomyces c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0b81b0d762710990d5d5dfae713b048
Additional file 1: Table of p-values and alignment profiles for additional 37 intein, group I or group II host proteins. Arrows point to intron or intein positions. Blue dots indicate intein positions, green dots group I intron positions, and orange
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::07fa8d54c5ed744ad03331a5faf66731
Autor:
Andrea M. Makkay, Ray O. Guerrero, R. Thane Papke, Artemis S. Louyakis, J. Peter Gogarten, Yutian Feng
Publikováno v:
Microbiology Resource Announcements
Isolated from Aran-Bidgol Lake in Iran, and reported here, Halorubrum ezzemoulense strain Fb21 represents the first complete genome from this archaeal species. Local recombination in this genome is in stark contrast to equidistant recombination event
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4802ecc1d3121f4a7558250acec6e570
https://doi.org/10.1128/mra.00096-19
https://doi.org/10.1128/mra.00096-19
Autor:
Fabian H. Leendertz, Sébastien Calvignac-Spencer, Joerg Graf, J. Peter Gogarten, T. Jonathan Davies, Roman M. Wittig, Jan F. Gogarten, Roger Mundry, Jacquelynn Benjamino, Michael C. Nelson, Alexander Mielke
Microbiomes impact a variety of processes including a host’s ability to access nutrients and maintain health. While host species differences in microbiomes have been described across ecosystems, little is known about how microbiomes assemble, parti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::84e3c49e32fa5c3e1bfca9ad180772d1
https://europepmc.org/articles/PMC6154966/
https://europepmc.org/articles/PMC6154966/