Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California.

Autor: Sabah Ul-Hasan, Robert M Bowers, Andrea Figueroa-Montiel, Alexei F Licea-Navarro, J Michael Beman, Tanja Woyke, Clarissa J Nobile

Publikováno v: PLoS ONE, Vol 14, Iss 2, p e0212355 (2019)

Microbial communities control numerous biogeochemical processes critical for ecosystem function and health. Most analyses of coastal microbial communities focus on the characterization of bacteria present in either sediment or seawater, with fewer st

Externí odkaz: https://doaj.org/article/c068dc1e0a644115ab3b70eeb25237a1

Refractory Dissolved Organic Matter has Similar Chemical Characteristics but Different Radiocarbon Signatures With Depth in the Marine Water Column

Autor: Margot E. White, Tran B. Nguyen, Irina Koester, Mary C. Lardie Gaylord, J. Michael Beman, Kenneth L. Smith, Ann P. McNichol, Steven R. Beaupré, Lihini I. Aluwihare

Publikováno v: Global Biogeochemical Cycles. 37

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::23ff822cf411a3df870d9692107abf03
https://doi.org/10.1029/2022gb007603

Thousands of small, novel genes predicted in global phage genomes

Autor: Brayon J. Fremin, Ami S. Bhatt, Nikos C. Kyrpides, Aditi Sengupta, Alexander Sczyrba, Aline Maria da Silva, Alison Buchan, Amelie Gaudin, Andreas Brune, Ann M. Hirsch, Anthony Neumann, Ashley Shade, Axel Visel, Barbara Campbell, Brett Baker, Brian P. Hedlund, Byron C. Crump, Cameron Currie, Charlene Kelly, Chris Craft, Christina Hazard, Christopher Francis, Christopher W. Schadt, Colin Averill, Courtney Mobilian, Dan Buckley, Dana Hunt, Daniel Noguera, David Beck, David L. Valentine, David Walsh, Dawn Sumner, Despoina Lymperopoulou, Devaki Bhaya, Donald A. Bryant, Elise Morrison, Eoin Brodie, Erica Young, Erik Lilleskov, Eva Högfors-Rönnholm, Feng Chen, Frank Stewart, Graeme W. Nicol, Hanno Teeling, Harry R. Beller, Hebe Dionisi, Hui-Ling Liao, J. Michael Beman, James Stegen, James Tiedje, Janet Jansson, Jean VanderGheynst, Jeanette Norton, Jeff Dangl, Jeffrey Blanchard, Jennifer Bowen, Jennifer Macalady, Jennifer Pett-Ridge, Jeremy Rich, Jérôme P. Payet, John D. Gladden, Jonathan D. Raff, Jonathan L. Klassen, Jonathan Tarn, Josh Neufeld, Kelly Gravuer, Kirsten Hofmockel, Ko-Hsuan Chen, Konstantinos Konstantinidis, Kristen M. DeAngelis, Laila P. Partida-Martinez, Laura Meredith, Ludmila Chistoserdova, Mary Ann Moran, Matthew Scarborough, Matthew Schrenk, Matthew Sullivan, Maude David, Michelle A. O'Malley, Monica Medina, Mussie Habteselassie, Nicholas D. Ward, Nicole Pietrasiak, Olivia U. Mason, Patrick O. Sorensen, Paulina Estrada de los Santos, Petr Baldrian, R. Michael McKay, Rachel Simister, Ramunas Stepanauskas, Rebecca Neumann, Rex Malmstrom, Ricardo Cavicchioli, Robert Kelly, Roland Hatzenpichler, Roman Stocker, Rose Ann Cattolico, Ryan Ziels, Rytas Vilgalys, Sara Blumer-Schuette, Sean Crowe, Simon Roux, Steven Hallam, Steven Lindow, Susan H. Brawley, Susannah Tringe, Tanja Woyke, Thea Whitman, Thomas Bianchi, Thomas Mock, Timothy Donohue, Timothy Y. James, Udaya C. Kalluri, Ulas Karaoz, Vincent Denef, Wen-Tso Liu, William Whitman, Yang Ouyang

Publikováno v: Cell Rep

Small genes (40,000 small-gene families in ~2.3 million phage genome contigs. We find that small genes in phage genomes are approximately 3-fold more prevalent than in host prokaryotic genomes. Our approach enriches for small genes that are translate

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7811364742ad68dd9e3a080fb28629f4
https://doi.org/10.1016/j.celrep.2022.110984

Euphotic zone nitrification in the California Current Ecosystem

Autor: Andrew E. Allen, Brandon M. Stephens, Lihini I. Aluwihare, Scott D. Wankel, Ariel Rabines, J. Michael Beman

Publikováno v: Limnology and Oceanography. 65:790-806

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::9057d60fbfafe3ef4ef5ed77d5c4a969
https://doi.org/10.1002/lno.11348

Archaeal and Bacterial Diversity and Distribution Patterns in Mediterranean-Climate Vernal Pools of Mexico and the Western USA

Autor: Jorge A. Mandussí Montiel-Molina, Jason P. Sexton, A. Carolin Frank, J. Michael Beman

Publikováno v: Microbial Ecology

Biogeographic patterns in microorganisms are poorly understood, despite the importance of microbial communities for a range of ecosystem processes. Our knowledge of microbial ecology and biogeography is particularly deficient in rare and threatened e

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9a9934a6600e1f45ca2ddd1a611bc078
https://pubmed.ncbi.nlm.nih.gov/34970700