Zobrazeno 1 - 10
of 83
pro vyhledávání: '"J. Gabarro-Arpa"'
Autor:
Mohammed Ouali, Hervé Gousset, J. Gabarro-Arpa, Eliane Taillandier, Jean Liquier, Frédéric Geinguenaud, Marc Le Bret
Publikováno v:
Nucleic Acids Research. 25:4816-4824
We present a comparative analysis of the water organization around the dTn.dAn x dTn triple helix and the Watson-Crick double helix dTn.dAn respectively by means of gravimetric measurements, infrared spectroscopy and molecular dynamics simulations. T
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::336e21427142d63e85d58f6668eab623
https://doi.org/10.1093/nar/25.23.4816
https://doi.org/10.1093/nar/25.23.4816
Publikováno v:
Journal of Molecular Biology. 246:194-208
The DNA duplex 5′ d(GCCACCAGCTC)-d(GAGCTGGTGGC) corresponds to the sequence 29 to 39 of the K- ras gene, which contains a hot spot for mutations. This has been studied by one and two-dimensional nuclear magnetic respnance, energy minimization and m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7d7ac24c0890b9c19376a4269b668398
https://doi.org/10.1006/jmbi.1994.0076
https://doi.org/10.1006/jmbi.1994.0076
Publikováno v:
Biochimie. 77:835-839
We describe how we can reduce the periodic bending motions in the simulation in vacuo of the molecular dynamics of a short DNA fragment containing the Gly 12 hot spot of the K-ras oncogene and having at its center a mismatch CA+.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9f0d2cd1e7f5e56d8ab08ec3ac23efd6
https://doi.org/10.1016/0300-9084(95)90000-4
https://doi.org/10.1016/0300-9084(95)90000-4
Publikováno v:
Biophysical Chemistry. 50:323-343
We present here a database of 32 deoxyribonucleotide triplets, that can be used as building blocks of triple helix forming deoxyribonucleotides on a computer. This database is made of all the pairing schemes of the triplets ATT, GCC+, ATA and GCG whe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1a8a1e0e6fae0806d39fa42c3d31e023
https://doi.org/10.1016/0301-4622(93)e0103-c
https://doi.org/10.1016/0301-4622(93)e0103-c
Publikováno v:
Journal of Computational Chemistry. 14:226-236
In this article, we describe the program MORMIN, which can simultaneously minimize the mechanical energy of a given macromolecular structure, together with a weighted quadratic penalty function of the difference between the observed and computed nucl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0a9ad0a39fea423dcc3d4ce55579ad23
https://doi.org/10.1002/jcc.540140210
https://doi.org/10.1002/jcc.540140210
Publikováno v:
Journal of Molecular Graphics. 10:166-173
We have written a programming language OCL (Object Command Language) to solve, in a general way, two recurring problems that arise during the construction of molecular models and during the geometrical characterization of macromolecules: how to move
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::017695dfe58757695f428531faaa5e58
https://doi.org/10.1016/0263-7855(92)80051-e
https://doi.org/10.1016/0263-7855(92)80051-e
Autor:
A. Guy, W. Guschlbauer, J. Gabarro-Arpa, M. Le Bret, Yves Boulard, Robert Teoule, J.A.H. Cognet, G. V. Fazakerley
Publikováno v:
Nucleic Acids Research. 19:5159-5167
We have determined by two-dimensional nuclear magnetic resonance studies and molecular mechanics calculations the three-dimensional solution structure of a 21 residue oligonucleotide capable of forming a hairpin structure with a loop of three thymidi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::357f951705f44ec6cb7a983a4e0b2bde
https://doi.org/10.1093/nar/19.19.5159
https://doi.org/10.1093/nar/19.19.5159
Publikováno v:
Journal of Biomolecular Structure and Dynamics. 7:1095-1115
In a previous publication (Ph. Cuniasse, L.C. Sowers, R. Eritja, B. Kaplan, M.F. Goodman, J.A.H. Cognet, M. Le Bret, W. Guschlbauer and G.V. Fazakerley, Biochemistry 28, 2018 (1989), we determined by two dimensional NMR studies and molecular mechanic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b2028bcacc578c365df36c24707b7053
https://doi.org/10.1080/07391102.1990.10508549
https://doi.org/10.1080/07391102.1990.10508549
Publikováno v:
Computers & Chemistry. 21:343-345
Based on the implementation of a high-level programming language, we have built a software platform which incorporates analysis of molecular simulations, molecular modelling and symbolic calculations.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1cba87566254476b9926c5e0cb8bb612
https://doi.org/10.1016/s0097-8485(96)00036-8
https://doi.org/10.1016/s0097-8485(96)00036-8
Publikováno v:
Proteins. 47(2)
Protein structures can be encoded into binary sequences (Gabarro-Arpa et al., Comput Chem 2000;24:693-698) these are used to define a Hamming distance in conformational space: the distance between two different molecular conformations is the number o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8785e9f486ca512a5f1fc98bee192f3
https://pubmed.ncbi.nlm.nih.gov/11933064
https://pubmed.ncbi.nlm.nih.gov/11933064