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Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. H Detrich, C. Ozouf-Costaz, D. Higuet

Publikováno v: BMC Genomics, Vol 19, Iss 1, Pp 1-18 (2018)

Abstract Background The importance of transposable elements (TEs) in the genomic remodeling and chromosomal rearrangements that accompany lineage diversification in vertebrates remains the subject of debate. The major impediment to understanding the

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Additional file 10: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

Degenerated PCR primers used to amplify retroelements in nototheniid genomes. For “Methods section”. Sum up of degenerated primers (primer sequence, motif overlapped, fragment size (pb)) used to amplify DIRS1, Gypsy and Copia retrotransposons in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::422aca6c4992d13e376bda16ac278331

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Additional file 8: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

Double mapping of two DIRS1 family representatives on chromosomes of T. hansoni. Double FISH with two DIRS1 family representatives (YNotoJ, directly labeled with fluorescein, greenish spots, and YNotoR, directly labled with Rhodamine, red spot). They

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c1cc7d3c11a369143bd3e6e8e3a93ab0

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Additional file 6: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

Summary of TEs probes for FISH. sum up (name, superfamily, family, species it comes from, kb size) of cloned sequences used as probes for Fluorescent in situ hybridization. (PDF 86 kb)

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Additional file 4: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

NJ bootstrap consensus tree for Gypsy based on the amino acid sequences of the RT/RH (a) and INT (b) regions. Complement of Fig. 2. We positioned our nine Gypsy TE family consensus sequences (GyNotoA, B, D, E, F, H, I, J, RT) in the context of a larg

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2b8a286f5c7a03b2b0002793f9b4f329

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Additional file 3: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

NJ bootstrap consensus tree for DIRS1 based on the RT/RH amino acid sequences. Complement of Fig. 1. We positioned our four DIRS1 family consensus sequences (YNotoJ, V, R, B) in the context of a larger diverse dataset composed of well-described TE fa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::66b69c0446579c38f54d7cc8a4da1684

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Additional file 7: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

Mapping of TEs on the chromosomes of five nototheniid species by FISH. FISH mapping of a second family of DIRS1 (YNotoR) and Gypsy (GyNotoE) identified and largely distributed in nototheniid genomes. (PDF 256 kb)

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Additional file 9: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

Taxonomic sampling for tissues, chromosomal suspensions and blood cells used in this study. For “Materials section”. Sum up of all specimen samples used for this study per Family and per Genus. Species (sample type, field reference, voucher refer

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Additional file 5: of Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Autor: J. Auvinet, P. Graça, L. Belkadi, L. Petit, E. Bonnivard, A. Dettaï, W. Detrich, C. Ozouf-Costaz, D. Higuet

NJ bootstrap consensus tree for Copia based on the RT/RH amino acid sequences. Complement of Fig. 3. We positioned our two Copia TE family consensus sequences (CoNotoA, B) in the context of a larger diverse dataset composed of well-described TE famil

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9a069c18766e86d7f1f99b61786c5457

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