Zobrazeno 1 - 7 of 7 pro vyhledávání: '"J W, Ponder"'
2
Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions
Autor: E S, Huang, R, Samudrala, J W, Ponder
Publikováno v: Journal of molecular biology. 290(1)
The problem of protein tertiary structure prediction from primary sequence can be separated into two subproblems: generation of a library of possible folds and specification of a best fold given the library. A distance geometry procedure based on ran
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::5fc4a12395bba2ed9528f8917087b8fd
https://pubmed.ncbi.nlm.nih.gov/10388572
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3
The structure and dynamics of rat apo-cellular retinol-binding protein II in solution: comparison with the X-ray structure
Autor: J, Lu, C L, Lin, C, Tang, J W, Ponder, J L, Kao, D P, Cistola, E, Li
Publikováno v: Journal of molecular biology. 286(4)
The structure and dynamics of rat apo-cellular retinol binding protein II (apo-CRBP II) in solution has been determined by multidimensional NMR analysis of uniformly enriched recombinant rat 13C, 15N-apo-CRBP II and 15N-apo-CRBP II. The final ensembl
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::9ce09d7a0ffa84965aa39d66012a9705
https://pubmed.ncbi.nlm.nih.gov/10047490
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4
A potential smoothing algorithm accurately predicts transmembrane helix packing
Autor: R V, Pappu, G R, Marshall, J W, Ponder
Publikováno v: Nature structural biology. 6(1)
Potential smoothing, a deterministic analog of stochastic simulated annealing, is a powerful paradigm for the solution of conformational search problems that require extensive sampling, and should be a useful tool in computational approaches to struc
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::9ab80d1039c2e6d76b4da9db11e42d9b
https://pubmed.ncbi.nlm.nih.gov/9886292
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5
Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods
Autor: E S, Huang, P, Koehl, M, Levitt, R V, Pappu, J W, Ponder
Publikováno v: Proteins. 33(2)
The ab initio folding problem can be divided into two sequential tasks of approximately equal computational complexity: the generation of native-like backbone folds and the positioning of side chains upon these backbones. The prediction of side-chain
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::e1cc6fa6199adc00e4cc391d01331bfc
https://pubmed.ncbi.nlm.nih.gov/9779788
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6
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
Autor: J W, Ponder, F M, Richards
Publikováno v: Journal of molecular biology. 193(4)
We assume that each class of protein has a core structure that is defined by internal residues, and that the external, solvent-contacting residues contribute to the stability of the structure, are of primary importance to function, but do not determi
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::bac55228135c9cc598a7add33478c671
https://pubmed.ncbi.nlm.nih.gov/2441069
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