Zobrazeno 1 - 10
of 212
pro vyhledávání: '"J Gregory Caporaso"'
Autor:
Christopher R Keefe, Matthew R Dillon, Elizabeth Gehret, Chloe Herman, Mary Jewell, Colin V Wood, Evan Bolyen, J Gregory Caporaso
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 11, p e1011676 (2023)
Study reproducibility is essential to corroborate, build on, and learn from the results of scientific research but is notoriously challenging in bioinformatics, which often involves large data sets and complex analytic workflows involving many differ
Externí odkaz:
https://doaj.org/article/857a8611e5c5484587581af7d7a748fa
Autor:
Nicholas A Bokulich, Paweł Łaniewski, Anja Adamov, Dana M Chase, J Gregory Caporaso, Melissa M Herbst-Kralovetz
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 2, p e1009876 (2022)
Emerging evidence suggests that host-microbe interaction in the cervicovaginal microenvironment contributes to cervical carcinogenesis, yet dissecting these complex interactions is challenging. Herein, we performed an integrated analysis of multiple
Externí odkaz:
https://doaj.org/article/ee1cc76221764a50b6c146450928f3cd
Autor:
Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato R M Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael S Robeson Ii, Nicholas A Bokulich, J Gregory Caporaso
Publikováno v:
PLoS Computational Biology, Vol 17, Iss 6, p e1009056 (2021)
In October of 2020, in response to the Coronavirus Disease 2019 (COVID-19) pandemic, our team hosted our first fully online workshop teaching the QIIME 2 microbiome bioinformatics platform. We had 75 enrolled participants who joined from at least 25
Externí odkaz:
https://doaj.org/article/32a041d9d5914929a84b078cdac01585
Autor:
Daniel Laubitz, Christy A Harrison, Monica T Midura-Kiela, Rajalakshmy Ramalingam, Claire B Larmonier, John H Chase, J Gregory Caporaso, David G Besselsen, Fayez K Ghishan, Pawel R Kiela
Publikováno v:
PLoS ONE, Vol 11, Iss 4, p e0152044 (2016)
Inflammatory bowel diseases (IBD) are associated with functional inhibition of epithelial Na+/H+ exchange. In mice, a selective disruption of NHE3 (Slc9a3), a major apical Na+/H+ exchanger, also promotes IBD-like symptoms and gut microbial dysbiosis.
Externí odkaz:
https://doaj.org/article/28718da128c4495d846ae57976e9def3
Autor:
Karen Schwarzberg, Rosalin Le, Balambal Bharti, Suzanne Lindsay, Giorgio Casaburi, Francesco Salvatore, Mohamed H Saber, Faisal Alonaizan, Jørgen Slots, Roberta A Gottlieb, J Gregory Caporaso, Scott T Kelley
Publikováno v:
PLoS ONE, Vol 9, Iss 1, p e86708 (2014)
Periodontitis is a progressive disease of the periodontium with a complex, polymicrobial etiology. Recent Next-Generation Sequencing (NGS) studies of the microbial diversity associated with periodontitis have revealed strong, community-level differen
Externí odkaz:
https://doaj.org/article/8860d86f0d1544dc81909ed66d14a5b1
Autor:
Se Jin Song, Christian Lauber, Elizabeth K Costello, Catherine A Lozupone, Gregory Humphrey, Donna Berg-Lyons, J Gregory Caporaso, Dan Knights, Jose C Clemente, Sara Nakielny, Jeffrey I Gordon, Noah Fierer, Rob Knight
Publikováno v:
eLife, Vol 2 (2013)
Human-associated microbial communities vary across individuals: possible contributing factors include (genetic) relatedness, diet, and age. However, our surroundings, including individuals with whom we interact, also likely shape our microbial commun
Externí odkaz:
https://doaj.org/article/5a1c9bf01bd44baaacd790b2b6006a93
Publikováno v:
PLoS ONE, Vol 8, Iss 6, p e67480 (2013)
Kelp forests are characterized by high biodiversity and productivity, and the cycling of kelp-produced carbon is a vital process in this ecosystem. Although bacteria are assumed to play a major role in kelp forest carbon cycling, knowledge of the com
Externí odkaz:
https://doaj.org/article/e3004635206c41638d4a22ef9b01cd66
Autor:
Krissi M Hewitt, Frank L Mannino, Antonio Gonzalez, John H Chase, J Gregory Caporaso, Rob Knight, Scott T Kelley
Publikováno v:
PLoS ONE, Vol 8, Iss 1, p e54703 (2013)
Infants in Neonatal Intensive Care Units (NICUs) are particularly susceptible to opportunistic infection. Infected infants have high mortality rates, and survivors often suffer life-long neurological disorders. The causes of many NICU infections go u
Externí odkaz:
https://doaj.org/article/459954baba554e56bec52fdd1652d3fc
Publikováno v:
PLoS ONE, Vol 6, Iss 2, p e16900 (2011)
Phylogenetic profiling has been widely used for comparing bacterial communities, but has so far been impossible to apply to viruses because of the lack of a single marker gene analogous to 16S rRNA. Here we developed a reference tree approach for mat
Externí odkaz:
https://doaj.org/article/50028ca5c01c441fafdf28b5e6e245df
Autor:
Emily M. Borsom, Kathryn Conn, Christopher R. Keefe, Chloe Herman, Gabrielle M. Orsini, Allyson H. Hirsch, Melanie Palma Avila, George Testo, Sierra A. Jaramillo, Evan Bolyen, Keehoon Lee, J. Gregory Caporaso, Emily Cope
Publikováno v:
Microbiology Spectrum. 11
The gut microbiota-brain axis is suspected to contribute to the development of Alzheimer’s Disease (AD), a neurodegenerative disease characterized by amyloid-β plaque deposition, neurofibrillary tangles, and neuroinflammation. To evaluate the role
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb854d2929bc10277a5a3b69a1265c2e
https://doi.org/10.1128/spectrum.03458-22
https://doi.org/10.1128/spectrum.03458-22