Zobrazeno 1 - 10
of 19
pro vyhledávání: '"Jérôme Audoux"'
Autor:
Jérôme Audoux, Nicolas Philippe, Rayan Chikhi, Mikaël Salson, Mélina Gallopin, Marc Gabriel, Jérémy Le Coz, Emilie Drouineau, Thérèse Commes, Daniel Gautheret
Publikováno v:
Genome Biology, Vol 18, Iss 1, Pp 1-15 (2017)
Abstract We introduce a k-mer-based computational protocol, DE-kupl, for capturing local RNA variation in a set of RNA-seq libraries, independently of a reference genome or transcriptome. DE-kupl extracts all k-mers with differential abundance direct
Externí odkaz:
https://doaj.org/article/a0fa2c7cae7041fdacc12c1b15ebcd61
Autor:
Jérôme Audoux, Mikaël Salson, Christophe F. Grosset, Sacha Beaumeunier, Jean-Marc Holder, Thérèse Commes, Nicolas Philippe
Publikováno v:
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-14 (2017)
Abstract Background The evolution of next-generation sequencing (NGS) technologies has led to increased focus on RNA-Seq. Many bioinformatic tools have been developed for RNA-Seq analysis, each with unique performance characteristics and configuratio
Externí odkaz:
https://doaj.org/article/e78956283deb41b09f2559ad32dea3aa
Autor:
Sophie Coutant, Armelle Luscan, Quentin Fort, Nicolas Soirat, Abdoulaye Hama Diallo, Mélanie Broutin, Julien Thevenon, Nicolas Philippe, Stéphanie Baert-Desurmont, David Geneviève, Raphaël Lanos, Sacha Beaumeunier, Laurent Mesnard, Jean-Marc Costa, Jérôme Audoux, Kevin Yauy, Laure Raymond, Vanna Geromel, Denis Bertrand, Jean-Marc Holder, Stenzel Cackowski, Aïcha Boughalem, Detlef Trost, Anne-Laure Bougé, Gaël Nicolas, Pascale Richard, Nicolas Duforet-Frebourg, François Lecoquierre, Quentin Testard
Numerous countries have set up population genomics plans, allowing an unprecedented growth in the ability of interpreting variants in human diseases. Retrospective interpretation of sequenced data in the light of the current literature is a major con
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3d1d21fbb3052a335d996f21f92bb22a
https://doi.org/10.1101/2021.07.13.21260422
https://doi.org/10.1101/2021.07.13.21260422
Autor:
Nicolas Gilbert, Thérèse Commes, Chloé Bessière, Anthony Boureux, Jérôme Audoux, Haoliang Xue, Benoit Guibert, Florence Ruffle, Sébastien Riquier, Anne-Laure Bougé, Daniel Gautheret
Publikováno v:
NAR Genomics and Bioinformatics
NAR Genomics and Bioinformatics, 2021, 3 (3), pp.lqab058. ⟨10.1093/nargab/lqab058⟩
NAR Genomics and Bioinformatics, 2021, 3 (3), pp.lqab058. ⟨10.1093/nargab/lqab058⟩
The huge body of publicly available RNA-sequencing (RNA-seq) libraries is a treasure of functional information allowing to quantify the expression of known or novel transcripts in tissues. However, transcript quantification commonly relies on alignme
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5c935fe62978966279f7f43f48e90b3b
https://doi.org/10.1101/2021.05.20.444982
https://doi.org/10.1101/2021.05.20.444982
Autor:
Sébastien, Riquier, Chloé, Bessiere, Benoit, Guibert, Anne-Laure, Bouge, Anthony, Boureux, Florence, Ruffle, Jérôme, Audoux, Nicolas, Gilbert, Haoliang, Xue, Daniel, Gautheret, Thérèse, Commes
Publikováno v:
NAR Genomics and Bioinformatics
The huge body of publicly available RNA-sequencing (RNA-seq) libraries is a treasure of functional information allowing to quantify the expression of known or novel transcripts in tissues. However, transcript quantification commonly relies on alignme
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::308bd94b0536b2057b1a51dc83668244
https://pubmed.ncbi.nlm.nih.gov/34179780
https://pubmed.ncbi.nlm.nih.gov/34179780
Autor:
Christophe Grosset, Benoit Rousseau, Thérèse Commes, Katarzyna B. Hooks, Tony Ernault, Nathalie Dugot-Senant, Anne Rullier, Anne-Aurélie Raymond, Marie-Annick Buendia, Jérôme Audoux, Sophie Branchereau, Laurence Brugières, Monique Fabre, Coralie Danet, Sarah Lesjean, Martin Hagedorn, Helena Fazli, Thierry Leste-Lasserre, Sophie Taque, Catherine Guettier
Publikováno v:
Hepatology
Hepatology, Wiley-Blackwell, 2018, 68 (1), pp.89-102. ⟨10.1002/hep.29672⟩
Hepatology, 2017, 1, ⟨10.1002/hep.29672⟩
Hepatology, Wiley-Blackwell, 2017, ⟨10.1002/hep.29672⟩
Hepatology, Wiley-Blackwell, 2018, 68 (1), pp.89-102. ⟨10.1002/hep.29672⟩
Hepatology, 2017, 1, ⟨10.1002/hep.29672⟩
Hepatology, Wiley-Blackwell, 2017, ⟨10.1002/hep.29672⟩
Surgery and cisplatin-based treatment of hepatoblastoma (HB) currently guarantee the survival of 70%-80% of patients. However, some important challenges remain in diagnosing high-risk tumors and identifying relevant targetable pathways offering new t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::adce269c00a9f130c69f151b9a57139e
https://www.hal.inserm.fr/inserm-02437928
https://www.hal.inserm.fr/inserm-02437928
Autor:
Anne-Laure, Bougé, Florence, Rufflé, Sébastien, Riquier, Benoit, Guibert, Jérôme, Audoux, Thérèse, Commes
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1769
RNA-Seq approach enables the detection and characterization of fusion or chimeric transcript associated to complex genome rearrangement. Until now, these events are classically identified at DNA level.Here we describe a complete procedure including a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a5ce7c1276f307f1b7aa8a49547059e8
https://pubmed.ncbi.nlm.nih.gov/29564822
https://pubmed.ncbi.nlm.nih.gov/29564822
Autor:
Christophe Grosset, Nicolas Philippe, Jean-Marc Holder, Jérôme Audoux, Sacha Beaumeunier, Mikaël Salson, Thérèse Commes
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2017, 18 (1), pp.428. ⟨10.1186/s12859-017-1831-5⟩
BMC Bioinformatics, 2017, 18 (1), pp.428. ⟨10.1186/s12859-017-1831-5⟩
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-14 (2017)
BMC Bioinformatics, BioMed Central, 2017, 18 (1), pp.428. ⟨10.1186/s12859-017-1831-5⟩
BMC Bioinformatics, 2017, 18 (1), pp.428. ⟨10.1186/s12859-017-1831-5⟩
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-14 (2017)
Background The evolution of next-generation sequencing (NGS) technologies has led to increased focus on RNA-Seq. Many bioinformatic tools have been developed for RNA-Seq analysis, each with unique performance characteristics and configuration paramet
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::06c437b6cec6c7b032659e0151ba328f
https://www.hal.inserm.fr/inserm-01612738
https://www.hal.inserm.fr/inserm-01612738
Autor:
Jérôme Audoux, Nicolas Philippe, Rayan Chikhi, Mikaël Salson, Mélina Gallopin, Marc Gabriel, Jérémy Le Coz, Thérèse Commes, Daniel Gautheret
Each individual cell produces its own set of transcripts, which is the combined result of genetic variation, transcription regulation and post-transcriptional processing. Due to this combinatorial nature, obtaining the exhaustive set of full-length t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d55077e2714059cd841cb28af6aa0daa
Autor:
Anne Laure Bougé, Anthony Boureux, Sacha Beaumeunier, Sébastien Riquier, Jean-Baptiste Gaillard, Nicolas Gilbert, Jean-Marc Lemaitre, Nicolas Philippe, Jérôme Audoux, Andre Megarbane, Delphine Bacq-Daian, Ronnie Alves, Christine Chomienne, Thérèse Commes, Florence Ruffle, Elias Bou Samra, Bruno Cassinat
Publikováno v:
F1000Research
F1000Research, Faculty of 1000, 2017, 6, ⟨10.12688/f1000research.11352.2⟩
F1000Research, 2017, 6, ⟨10.12688/f1000research.11352.2⟩
F1000Research, Faculty of 1000, 2017, 6, ⟨10.12688/f1000research.11352.2⟩
F1000Research, 2017, 6, ⟨10.12688/f1000research.11352.2⟩
Background: High-throughput next generation sequencing (NGS) technologies enable the detection of biomarkers used for tumor classification, disease monitoring and cancer therapy. Whole-transcriptome analysis using RNA-seq is important, not only as a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45b61a4d7351cfdf0a374c667af2da3f
https://hal.umontpellier.fr/hal-01840091/document
https://hal.umontpellier.fr/hal-01840091/document