Zobrazeno 1 - 10
of 7 054
pro vyhledávání: '"J, Harry"'
Autor:
Hegde, Harshad, Vendetti, Jennifer, Goutte-Gattat, Damien, Caufield, J Harry, Graybeal, John B, Harris, Nomi L, Karam, Naouel, Kindermann, Christian, Matentzoglu, Nicolas, Overton, James A, Musen, Mark A, Mungall, Christopher J
Ontologies and knowledge graphs (KGs) are general-purpose computable representations of some domain, such as human anatomy, and are frequently a crucial part of modern information systems. Most of these structures change over time, incorporating new
Externí odkaz:
http://arxiv.org/abs/2409.13906
Free energies play a central role in characterising the behaviour of chemical systems and are among the most important quantities that can be calculated by molecular dynamics simulations. The free energy of hydration in particular is a well-studied p
Externí odkaz:
http://arxiv.org/abs/2405.18171
Autor:
Joachimiak, Marcin P., Miller, Mark A., Caufield, J. Harry, Ly, Ryan, Harris, Nomi L., Tritt, Andrew, Mungall, Christopher J., Bouchard, Kristofer E.
The Artificial Intelligence Ontology (AIO) is a systematization of artificial intelligence (AI) concepts, methodologies, and their interrelations. Developed via manual curation, with the additional assistance of large language models (LLMs), AIO aims
Externí odkaz:
http://arxiv.org/abs/2404.03044
Autor:
SHEPHERD, J. BARRIE
Publikováno v:
CrossCurrents, 2002 Jan 01. 51(4), 538-538.
Externí odkaz:
https://www.jstor.org/stable/24461280
Autor:
Batatia, Ilyes, Benner, Philipp, Chiang, Yuan, Elena, Alin M., Kovács, Dávid P., Riebesell, Janosh, Advincula, Xavier R., Asta, Mark, Avaylon, Matthew, Baldwin, William J., Berger, Fabian, Bernstein, Noam, Bhowmik, Arghya, Blau, Samuel M., Cărare, Vlad, Darby, James P., De, Sandip, Della Pia, Flaviano, Deringer, Volker L., Elijošius, Rokas, El-Machachi, Zakariya, Falcioni, Fabio, Fako, Edvin, Ferrari, Andrea C., Genreith-Schriever, Annalena, George, Janine, Goodall, Rhys E. A., Grey, Clare P., Grigorev, Petr, Han, Shuang, Handley, Will, Heenen, Hendrik H., Hermansson, Kersti, Holm, Christian, Jaafar, Jad, Hofmann, Stephan, Jakob, Konstantin S., Jung, Hyunwook, Kapil, Venkat, Kaplan, Aaron D., Karimitari, Nima, Kermode, James R., Kroupa, Namu, Kullgren, Jolla, Kuner, Matthew C., Kuryla, Domantas, Liepuoniute, Guoda, Margraf, Johannes T., Magdău, Ioan-Bogdan, Michaelides, Angelos, Moore, J. Harry, Naik, Aakash A., Niblett, Samuel P., Norwood, Sam Walton, O'Neill, Niamh, Ortner, Christoph, Persson, Kristin A., Reuter, Karsten, Rosen, Andrew S., Schaaf, Lars L., Schran, Christoph, Shi, Benjamin X., Sivonxay, Eric, Stenczel, Tamás K., Svahn, Viktor, Sutton, Christopher, Swinburne, Thomas D., Tilly, Jules, van der Oord, Cas, Varga-Umbrich, Eszter, Vegge, Tejs, Vondrák, Martin, Wang, Yangshuai, Witt, William C., Zills, Fabian, Csányi, Gábor
Machine-learned force fields have transformed the atomistic modelling of materials by enabling simulations of ab initio quality on unprecedented time and length scales. However, they are currently limited by: (i) the significant computational and hum
Externí odkaz:
http://arxiv.org/abs/2401.00096
Autor:
Kovács, Dávid Péter, Moore, J. Harry, Browning, Nicholas J., Batatia, Ilyes, Horton, Joshua T., Kapil, Venkat, Witt, William C., Magdău, Ioan-Bogdan, Cole, Daniel J., Csányi, Gábor
Classical empirical force fields have dominated biomolecular simulation for over 50 years. Although widely used in drug discovery, crystal structure prediction, and biomolecular dynamics, they generally lack the accuracy and transferability required
Externí odkaz:
http://arxiv.org/abs/2312.15211
Autor:
Matentzoglu, Nicolas, Caufield, J. Harry, Hegde, Harshad B., Reese, Justin T., Moxon, Sierra, Kim, Hyeongsik, Harris, Nomi L., Haendel, Melissa A, Mungall, Christopher J.
Aligning terminological resources, including ontologies, controlled vocabularies, taxonomies, and value sets is a critical part of data integration in many domains such as healthcare, chemistry, and biomedical research. Entity mapping is the process
Externí odkaz:
http://arxiv.org/abs/2310.03666
Autor:
Joachimiak, Marcin P., Caufield, J. Harry, Harris, Nomi L., Kim, Hyeongsik, Mungall, Christopher J.
Molecular biologists frequently interpret gene lists derived from high-throughput experiments and computational analysis. This is typically done as a statistical enrichment analysis that measures the over- or under-representation of biological functi
Externí odkaz:
http://arxiv.org/abs/2305.13338
Autor:
Caufield, J. Harry, Hegde, Harshad, Emonet, Vincent, Harris, Nomi L., Joachimiak, Marcin P., Matentzoglu, Nicolas, Kim, HyeongSik, Moxon, Sierra A. T., Reese, Justin T., Haendel, Melissa A., Robinson, Peter N., Mungall, Christopher J.
Publikováno v:
Bioinformatics, 2024 Mar 4;40(3)
Creating knowledge bases and ontologies is a time consuming task that relies on a manual curation. AI/NLP approaches can assist expert curators in populating these knowledge bases, but current approaches rely on extensive training data, and are not a
Externí odkaz:
http://arxiv.org/abs/2304.02711