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of 7
pro vyhledávání: '"Izaak Coleman"'
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-12 (2020)
Abstract Background Current popular variant calling pipelines rely on the mapping coordinates of each input read to a reference genome in order to detect variants. Since reads deriving from variant loci that diverge in sequence substantially from the
Externí odkaz:
https://doaj.org/article/1b2f4630c19f4d3798a00a7143e9bbde
Autor:
Josie L. Ferreira, Izaak Coleman, Max L. Addison, Tobias Zachs, Bonnie L. Quigley, Kristin Wuichet, Morgan Beeby
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Externí odkaz:
https://doaj.org/article/0063d9403f094c968934604c59b49364
Autor:
Izaak Coleman, Tal Korem
Publikováno v:
mSystems, Vol 6, Iss 4 (2021)
ABSTRACT A central paradigm in microbiome data analysis, which we term the genome-centric paradigm, is that a linear (non-branching) DNA sequence is the ideal representation of a microbial genome. This representation is natural, as microbes indeed ha
Externí odkaz:
https://doaj.org/article/d267b5dfcc284826a5bb1f55937c3d7d
Autor:
Josie L. Ferreira, Izaak Coleman, Max L. Addison, Tobias Zachs, Bonnie L. Quigley, Kristin Wuichet, Morgan Beeby
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
The γ-proteobacteria are a group of diverse bacteria including pathogenic Escherichia, Salmonella, Vibrio, and Pseudomonas species. The majority swim in liquids with polar, sodium-driven flagella and swarm on surfaces with lateral, non-chemotactic f
Externí odkaz:
https://doaj.org/article/ceb3de021d844b77ad250fc2235d1cc8
Autor:
Kristin Wuichet, Josie L. Ferreira, Tobias Zachs, Bonnie Quigley, Max L. Addison, Izaak Coleman, Morgan Beeby
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Frontiers in Microbiology
Frontiers in Microbiology, 12
Frontiers in Microbiology
Frontiers in Microbiology, 12
The γ-proteobacteria are a group of diverse bacteria including pathogenic Escherichia, Salmonella, Vibrio, and Pseudomonas species. The majority swim in liquids with polar, sodium-driven flagella and swarm on surfaces with lateral, non-chemotactic f
Publikováno v:
FPGA
Existing FPGA accelerators for short read mapping often fail to utilize the complete biological information in sequencing data for simple hardware design, leading to missed or incorrect alignment. Furthermore, their performance may not be optimized a
Publikováno v:
FPT
Recent advancements in the throughput of next-generation sequencing machines pose a huge computational challenge in analyzing the massive quantities of sequenced data produced. A critical initial step of genomic data analysis is short read alignment,