Zobrazeno 1 - 7
of 7
pro vyhledávání: '"Ivan Tolstoganov"'
Publikováno v:
PeerJ, Vol 12, p e18050 (2024)
Background Recent advances in long-read sequencing technologies enabled accurate and contiguous de novo assemblies of large genomes and metagenomes. However, even long and accurate high-fidelity (HiFi) reads do not resolve repeats that are longer tha
Externí odkaz:
https://doaj.org/article/ca3965b327204ffd878f0c1a3b5ca87d
Publikováno v:
STAR Protocols, Vol 4, Iss 3, Pp 102417- (2023)
Summary: The analysis of metagenomic data obtained via high-throughput DNA sequencing is primarily carried out by a dedicated binning process involving clustering contigs, presumably belonging to the same species. Here, we present a protocol for impr
Externí odkaz:
https://doaj.org/article/a381f70796dd40009eeafb03ddbed882
Publikováno v:
iScience, Vol 25, Iss 8, Pp 104770- (2022)
Summary: Despite the recent advances in high-throughput sequencing, metagenome analysis of microbial populations still remains a challenge. In particular, the metagenome-assembled genomes (MAGs) are often fragmented due to interspecies repeats, uneve
Externí odkaz:
https://doaj.org/article/05983ad72d5741d79ec3ccb8eeebc33c
Autor:
Valeriia Ivanova, Ekaterina Chernevskaya, Petr Vasiluev, Artem Ivanov, Ivan Tolstoganov, Daria Shafranskaya, Vladimir Ulyantsev, Anton Korobeynikov, Sergey V. Razin, Natalia Beloborodova, Sergey V. Ulianov, Alexander Tyakht
Publikováno v:
Frontiers in Microbiology, Vol 12 (2022)
Gut microbiome in critically ill patients shows profound dysbiosis. The most vulnerable is the subgroup of chronically critically ill (CCI) patients – those suffering from long-term dependence on support systems in intensive care units. It is impor
Externí odkaz:
https://doaj.org/article/6a982515a354401fb17ff78ab7006370
Recent advances in long-read sequencing technologies enabled accuratede novoassembly of large genomes and metagenomes. However, even long and accurate high-fidelity (HiFi) reads do not resolve repeats that are longer than the read lengths. This limit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::727605688378793f1cafe1bcdeff493c
https://doi.org/10.1101/2022.12.08.519233
https://doi.org/10.1101/2022.12.08.519233
Autor:
Derek M. Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M. Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T. Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H. Medema, Itzhak Mizrahi, Pavel A. Pevzner, Timothy P. L. Smith
Publikováno v:
Nature Biotechnology
Nature Biotechnology 40 (2022) 5
Nature Biotechnology, 40(5), 711-719
Nature Biotechnology 40 (2022) 5
Nature Biotechnology, 40(5), 711-719
Microbial communities might include distinct lineages of closely related organisms that complicate metagenomic assembly and prevent the generation of complete metagenome-assembled genomes (MAGs). Here we show that deep sequencing using long (HiFi) re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8630704193e982740673b94f7b84ca10
https://pubmed.ncbi.nlm.nih.gov/34980920
https://pubmed.ncbi.nlm.nih.gov/34980920
Publikováno v:
Bioinformatics
Motivation The recently developed barcoding-based synthetic long read (SLR) technologies have already found many applications in genome assembly and analysis. However, although some new barcoding protocols are emerging and the range of SLR applicatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc94e3ca58f494bf9b6a42b0c89a4f7f
https://pubmed.ncbi.nlm.nih.gov/31510642
https://pubmed.ncbi.nlm.nih.gov/31510642