Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Ivan S Yevshin"'
Publikováno v:
PLoS ONE, Vol 15, Iss 12, p e0243332 (2020)
Creating a complete picture of the regulation of transcription seems to be an urgent task of modern biology. Regulation of transcription is a complex process carried out by transcription factors (TFs) and auxiliary proteins. Over the past decade, ChI
Externí odkaz:
https://doaj.org/article/c10f56ae1f2942dfa6e287bfa9e455fa
Autor:
Semyon K Kolmykov, Yury V Kondrakhin, Ivan S Yevshin, Ruslan N Sharipov, Anna S Ryabova, Fedor A Kolpakov
Publikováno v:
PLoS ONE, Vol 14, Iss 8, p e0221760 (2019)
Chromatin immunoprecipitation followed by sequencing, i.e. ChIP-Seq, is a widely used experimental technology for the identification of functional protein-DNA interactions. Nowadays, such databases as ENCODE, GTRD, ChIP-Atlas and ReMap systematically
Externí odkaz:
https://doaj.org/article/a65ff55dce9c44bf900f5299459af02e
Autor:
Anastasiia R. Volyanskaya, Ilya R. Akberdin, Mikhail A. Kulyashov, Ivan S. Yevshin, Michael N. Romanov, Elena I. Shagimardanova, Oleg A. Gusev, Fedor A. Kolpakov
Publikováno v:
Animal Nutrition, Vol 17, Iss , Pp 61-74 (2024)
In recent decades, a lot of research has been conducted to explore poultry feeding behavior. However, up to now, the processes behind poultry feeding behavior remain poorly understood. The review generalizes modern expertise about the hormonal regula
Externí odkaz:
https://doaj.org/article/590d23a7408744c59f9c12d47b736f86
Autor:
Ilya E. Vorontsov, Alla D. Fedorova, Ivan S. Yevshin, Ruslan N. Sharipov, Fedor A. Kolpakov, Vsevolod J. Makeev, Ivan V. Kulakovskiy
Publikováno v:
BMC Research Notes, Vol 11, Iss 1, Pp 1-3 (2018)
Abstract Objectives Mammalian genomics studies, especially those focusing on transcriptional regulation, require information on genomic locations of regulatory regions, particularly, transcription factor (TF) binding sites. There are plenty of publis
Externí odkaz:
https://doaj.org/article/4f50bc52e69f4ff5868245f0a73bf48e
Autor:
Elena Kutumova, Yury V. Kondrakhin, Ilya R. Akberdin, Alexander E. Kel, Ivan S. Yevshin, llya Kiselev, Semyon K. Kolmykov, Fedor A. Kolpakov, Anna S. Ryabova, S. S. Pintus, Nikita Mandrik, Ruslan N. Sharipov, Timur A. Kashapov
Publikováno v:
Nucleic Acids Research
BioUML (homepage: http://www.biouml.org, main public server: https://ict.biouml.org) is a web-based integrated environment (platform) for systems biology and the analysis of biomedical data generated by omics technologies. The BioUML vision is to pro
Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer
Autor:
Leonid S. Leskov, Alexander E. Kel, Manel Esteller, Olga V. Kel-Margoulis, Ulyana A. Boyarskikh, Sebastian Moran, Philip Stegmaier, Daria Stelmashenko, Anna Martínez-Cardús, Nikita Mandrik, Jeannette Koschmann, Edgar Wingender, Andrey Sokolov, Fedor A. Kolpakov, Ivan S. Yevshin, Mathias Krull, Maxim L. Filipenko
Publikováno v:
BMC Bioinformatics, Vol 20, Iss S4, Pp 1-20 (2019)
BMC Bioinformatics
BMC Bioinformatics
Background The search for molecular biomarkers of early-onset colorectal cancer (CRC) is an important but still quite challenging and unsolved task. Detection of CpG methylation in human DNA obtained from blood or stool has been proposed as a promisi
Autor:
Ruslan N. Sharipov, Yury V. Kondrakhin, Semyon K. Kolmykov, Fedor A. Kolpakov, Ivan S. Yevshin
Publikováno v:
Nucleic Acids Research
The current version of the Gene Transcription Regulation Database (GTRD; http://gtrd.biouml.org) contains information about: (i) transcription factor binding sites (TFBSs) and transcription coactivators identified by ChIP-seq experiments for Homo sap
Autor:
O. V. Tyapkina, Oleg Gusev, S. S. Pintus, Ilya R. Akberdin, Fedor A. Kolpakov, Elena Shagimardanova, Ivan S. Yevshin, G. R. Gazizova, Islam Nigmetzyanov, Daniil V. Popov, Pavel A. Makhnovskii, Ruslan Devyatiyarov, L. F. Nurullin
Publikováno v:
Biology
Biology, Vol 10, Iss 557, p 557 (2021)
Volume 10
Issue 6
Biology, Vol 10, Iss 557, p 557 (2021)
Volume 10
Issue 6
Simple Summary The genetic process underlying the control of skeletal muscle homeostasis is a key factor in methods that develop technologies to prevent age and immobility-driven atrophy. In the current paper, using advanced methods for the whole-gen
Autor:
Alexander E. Kel, Ivan V. Kulakovskiy, Ruslan N. Sharipov, Ivan S. Yevshin, Yury V. Kondrakhin, Mikhail A. Kulyashov, Semyon K. Kolmykov, Fedor A. Kolpakov, Vsevolod J. Makeev
Publikováno v:
Nucleic Acids Research
The Gene Transcription Regulation Database (GTRD; http://gtrd.biouml.org/) contains uniformly annotated and processed NGS data related to gene transcription regulation: ChIP-seq, ChIP-exo, DNase-seq, MNase-seq, ATAC-seq and RNA-seq. With the latest r
Autor:
Eugene F. Baulin, Semyon K. Kolmykov, Fedor A. Kolpakov, Vsevolod J. Makeev, Dariia Bykova, Dmitry Penzar, Sergey Abramov, Ilya E. Vorontsov, Ivan V. Kulakovskiy, Ivan S. Yevshin, M. V. Fridman, Alexandr Boytsov, Alexander V. Favorov
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Sequence variants in gene regulatory regions alter gene expression and contribute to phenotypes of individual cells and the whole organism, including disease susceptibility and progression. Single-nucleotide variants in enhancers or promoters may aff
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::59f5379222d7d1324f5e35ecd7df1638
https://doi.org/10.1101/2020.10.07.327643
https://doi.org/10.1101/2020.10.07.327643