Zobrazeno 1 - 10
of 37
pro vyhledávání: '"Irina O Vvedenskaya"'
Autor:
Tingting Zhao, Irina O Vvedenskaya, William KM Lai, Shrabani Basu, B Franklin Pugh, Bryce E Nickels, Craig D Kaplan
Publikováno v:
eLife, Vol 10 (2021)
In Saccharomyces cerevisiae, RNA polymerase II (Pol II) selects transcription start sites (TSSs) by a unidirectional scanning process. During scanning, a preinitiation complex (PIC) assembled at an upstream core promoter initiates at select positions
Externí odkaz:
https://doaj.org/article/37c27916ae4b45b0b114094caef6209f
Autor:
Kathryn M Ramsey, Melisa L Osborne, Irina O Vvedenskaya, Cathy Su, Bryce E Nickels, Simon L Dove
Publikováno v:
PLoS Pathogens, Vol 11, Iss 4, p e1004793 (2015)
Francisella tularensis is a Gram-negative bacterium whose ability to replicate within macrophages and cause disease is strictly dependent upon the coordinate activities of three transcription regulators called MglA, SspA, and PigR. MglA and SspA form
Externí odkaz:
https://doaj.org/article/5cd4971f2c814ab0b8cae04fb6aa4ea0
Transcription start site (TSS) selection is a key step in gene expression and occurs at many promoter positions over a wide range of efficiencies. Here, we develop a massively parallel reporter assay to quantitatively dissect contributions of promote
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d27fd0176aad542ba159e0dd29168e27
https://doi.org/10.1101/2021.11.09.467992
https://doi.org/10.1101/2021.11.09.467992
Autor:
Kyle S, Skalenko, Lingting, Li, Yuanchao, Zhang, Irina O, Vvedenskaya, Jared T, Winkelman, Alexander L, Cope, Deanne M, Taylor, Premal, Shah, Richard H, Ebright, Justin B, Kinney, Yu, Zhang, Bryce E, Nickels
Publikováno v:
Proc Natl Acad Sci U S A
Chemical modifications of RNA 5′-ends enable “epitranscriptomic” regulation, influencing multiple aspects of RNA fate. In transcription initiation, a large inventory of substrates compete with nucleoside triphosphates for use as initiating enti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a83e90107ae3e84ab3625e339457735d
https://pubmed.ncbi.nlm.nih.gov/34187896
https://pubmed.ncbi.nlm.nih.gov/34187896
Autor:
Lingting Li, Yuanchao Zhang, Irina O. Vvedenskaya, Bryce E. Nickels, Deanne Taylor, Kyle S. Skalenko, Premal Shah, Yu Zhang, Richard H. Ebright, Jared T. Winkelman, Justin B. Kinney, Alexander L. Cope
Publikováno v:
Proceedings of the National Academy of Sciences. 118
Chemical modifications of RNA 5'-ends enable "epitranscriptomic" regulation, influencing multiple aspects of RNA fate. In transcription initiation, a large inventory of substrates compete with nucleoside triphosphates for use as initiating entities,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d673f5619b1c52f0f2ad2c28c4e13fec
https://doi.org/10.1073/pnas.2106388118
https://doi.org/10.1073/pnas.2106388118
Autor:
Irina O. Vvedenskaya, Craig D. Kaplan, Tingting Zhao, William K. M. Lai, B. Franklin Pugh, Bryce E. Nickels, Shrabani Basu
In Saccharomyces cerevisiae, RNA Polymerase II (Pol II) selects transcription start sites (TSS) by a unidirectional scanning process. During scanning, a preinitiation complex (PIC) assembled at an upstream core promoter initiates at select positions
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4db08ed5df5cbfe1262f53e7c1cbe91f
https://doi.org/10.1101/2021.05.05.442816
https://doi.org/10.1101/2021.05.05.442816
Autor:
Justin B. Kinney, Richard H. Ebright, Alexander L. Cope, Kyle S. Skalenko, Deanne Taylor, Bryce E. Nickels, Lingting Li, Yuanchao Zhang, Irina O. Vvedenskaya, Yu Zhang, Premal Shah, Jared T. Winkelman
Chemical modifications of RNA 5′ ends enable “epitranscriptomic” regulation, influencing multiple aspects of RNA fate. In transcription initiation, a large inventory of substrates compete with nucleoside triphosphates (NTPs) for use as initiati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f29451834a976c4596784163bb392168
https://doi.org/10.1101/2021.04.06.438613
https://doi.org/10.1101/2021.04.06.438613
Autor:
Jordi Abante Llenas, William K. M. Lai, Huiyan Jin, Richard P. Metz, Kang Hoo Han, Scott Schwartz, Tingting Zhao, B. Franklin Pugh, Charles D. Johnson, Ping Cui, Craig D. Kaplan, Irina O. Vvedenskaya, Indranil Malik, Sing-Hoi Sze, Bryce E. Nickels, Pavel Čabart, Alex M. Visbisky, Chenxi Qiu
Publikováno v:
Genome Biology
Genome Biology, Vol 21, Iss 1, Pp 1-31 (2020)
Genome Biology, Vol 21, Iss 1, Pp 1-31 (2020)
Background The majority of eukaryotic promoters utilize multiple transcription start sites (TSSs). How multiple TSSs are specified at individual promoters across eukaryotes is not understood for most species. In Saccharomyces cerevisiae, a pre-initia
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5047049ff5ca8f0eae5f4db1590a816e
https://doi.org/10.1186/s13059-020-02040-0
https://doi.org/10.1186/s13059-020-02040-0
Autor:
Bryce E. Nickels, Irina O. Vvedenskaya
Publikováno v:
STAR Protocols, Vol 1, Iss 1, Pp 100002-(2020)
STAR protocols
STAR protocols
SUMMARY Nucleoside-containing metabolites such as the oxidized and reduced forms of nicotinamide adenine dinucleotide (NAD+ and NADH), 3′-desphospho-coenzyme A (dpCoA), and flavin adenine dinucleotide (FAD) can be incorporated as RNA 5′ end caps
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9ebd7cd5fa6774552e5c82ed4a0f6d40
http://www.sciencedirect.com/science/article/pii/S2666166719300024
http://www.sciencedirect.com/science/article/pii/S2666166719300024