FBB: a fast Bayesian-bound tool to calibrate RNA-seq aligners

Autor: Jeff Hasty, Irene Rodriguez-Lujan, Ramon Huerta

Publikováno v: Bioinformatics. 33:210-218

Motivation Despite RNA-seq reads provide quality scores that represent the probability of calling a correct base, these values are not probabilistically integrated in most alignment algorithms. Based on the quality scores of the reads, we propose to

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c80c89afb5afd0432bf396a6f3177b7
https://doi.org/10.1093/bioinformatics/btw608

On the calibration of sensor arrays for pattern recognition using the minimal number of experiments

Autor: Alexander Vergara, Margie L. Homer, Ramon Huerta, Jordi Fonollosa, Irene Rodriguez-Lujan

Publikováno v: Chemometrics and Intelligent Laboratory Systems. 130:123-134

We investigate optimal experiment selection to train a classifier on gas sensor arrays to get the maximal possible performance in a limited number of experiments. In gas sensing, while collecting data for a particular sensor array, one has to choose

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::4ed4c3f635977833604bccacf9116ca9
https://doi.org/10.1016/j.chemolab.2013.10.012

Online decorrelation of humidity and temperature in chemical sensors for continuous monitoring

Autor: Thiago Mosqueiro, Irene Rodriguez-Lujan, Nikolai F. Rulkov, Ramon Huerta, Jordi Fonollosa

Publikováno v: Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
Biblos-e Archivo. Repositorio Institucional de la UAM
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

This is the author’s version of a work that was accepted for publication in Chemometrics and Intelligent Laboratory Systems. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e4b59c3aec9cc9436c437c19ee63fa8
http://hdl.handle.net/2445/118302

A Fisher consistent multiclass loss function with variable margin on positive examples

Autor: Irene Rodriguez-Lujan, Ramon Huerta

Publikováno v: Electron. J. Statist. 9, no. 2 (2015), 2255-2292
Biblos-e Archivo. Repositorio Institucional de la UAM
instname

The concept of pointwise Fisher consistency (or classification calibration) states necessary and sufficient conditions to have Bayes consistency when a classifier minimizes a surrogate loss function instead of the 0-1 loss. We present a family of mul

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47092082ecebb2fb9ebe3b1dd5b6eafc
https://doi.org/10.1214/15-ejs1073

Chemical gas sensor array dataset

Autor: Irene Rodriguez-Lujan, Ramon Huerta, Jordi Fonollosa

Publikováno v: Biblos-e Archivo. Repositorio Institucional de la UAM
instname
Data in Brief, Vol 3, Iss C, Pp 85-89 (2015)
Data in Brief

To address drift in chemical sensing, an extensive dataset was collected over a period of three years. An array of 16 metal-oxide gas sensors was exposed to six different volatile organic compounds at different concentration levels under tightly-cont

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f4685317f937b6f1cb651778557d1a82
http://hdl.handle.net/10486/674189