Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Ira Iosub"'
Autor:
Rob van Nues, Gabriele Schweikert, Erica de Leau, Alina Selega, Andrew Langford, Ryan Franklin, Ira Iosub, Peter Wadsworth, Guido Sanguinetti, Sander Granneman
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-18 (2017)
Protein RNA interactions are dynamic and regulated in response to environmental changes. Here the authors describe ‘kinetic CRAC’, an approach that allows time resolved analyses of protein RNA interactions with minute time point resolution and ap
Externí odkaz:
https://doaj.org/article/4af8f874266d433eb3ee39b859f6ee20
To preserve genome integrity, all living organisms have developed strategies to respond to chromosomal damage. One such response is the repair of DNA double-strand breaks (DSBs), one of the most toxic forms of DNA lesions. In E. coli, DSBs are repair
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ec651376d8936dbe517a22d1469cf5c6
https://doi.org/10.1101/2021.10.23.465540
https://doi.org/10.1101/2021.10.23.465540
Autor:
Rob van Nues, Marta Marchioretto, Sander Granneman, Ira Iosub, Gabriella Viero, Stuart William McKellar
Publikováno v:
Iosub, I, Marchioretto, M, Van Nues, R, Mckellar, S, Viero, G & Granneman, S 2020, ' The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli ', Rna biology, pp. 914-931 . https://doi.org/10.1080/15476286.2020.1827784
RNA biology (2020). doi:10.1080/15476286.2020.1827784
info:cnr-pdr/source/autori:Iosub I.A.; Marchioretto M.; van Nues R.W.; McKellar S.; Viero G.; Granneman S./titolo:The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli/doi:10.1080%2F15476286.2020.1827784/rivista:RNA biology/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume
RNA Biology
article-version (VoR) Version of Record
RNA biology (2020). doi:10.1080/15476286.2020.1827784
info:cnr-pdr/source/autori:Iosub I.A.; Marchioretto M.; van Nues R.W.; McKellar S.; Viero G.; Granneman S./titolo:The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli/doi:10.1080%2F15476286.2020.1827784/rivista:RNA biology/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume
RNA Biology
article-version (VoR) Version of Record
Previous high-throughput studies in Gram-negative bacteria identified a large number of 3ʹUTR fragments that potentially function as sRNAs. Here we extensively characterize the MalH sRNA. We show that MalH is a stable degradation intermediate derive
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::83a7980f32e688cfc44c6f4ade9039cf
https://www.pure.ed.ac.uk/ws/files/173568157/The_mRNA_derived_MalH_sRNA_contributes_to_alternative_carbon_source_utilization_by_tuning_maltoporin_expression_in_E_coli.pdf
https://www.pure.ed.ac.uk/ws/files/173568157/The_mRNA_derived_MalH_sRNA_contributes_to_alternative_carbon_source_utilization_by_tuning_maltoporin_expression_in_E_coli.pdf
Autor:
Rob van Nues, Ira Iosub, Stuart William McKellar, Sander Granneman, Karen Jule Nieken, Jai J. Tree, Marta Marchioretto, Brandon M Sy, Gabriella Viero
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a597b946113a6c37a8171beade5613dc
https://doi.org/10.7554/elife.54655.sa2
https://doi.org/10.7554/elife.54655.sa2
Autor:
Marta Marchioretto, Jai J. Tree, Karen Jule Nieken, Rob van Nues, Stuart William McKellar, Gabriella Viero, Sander Granneman, Ira Iosub, Brandon M Sy
A reason microorganisms are so successful is their ability to rapidly adapt to constantly changing environments. Bacterial small RNAs (sRNAs) play an important role in adaptive responses by shaping gene expression profiles and integrating multiple re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::66ceab0f3445728fa27a9e9a5678a984
https://doi.org/10.1101/481986
https://doi.org/10.1101/481986
Publikováno v:
Selega, A, Sirocchi, C, Iosub, I, Granneman, S & Sanguinetti, G 2017, ' Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments ', Nature Methods, vol. 14, no. 1, pp. 83-89 . https://doi.org/10.1038/nmeth.4068
BUM-HMM is a statistically robust modeling pipeline for interpreting high-throughput RNA structure probing data, including that from transcriptome-wide experiments. Structure probing coupled with high-throughput sequencing could revolutionize our und
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24fa941766e711e2699a3e7c03d76ea5
http://hdl.handle.net/20.500.11767/117325
http://hdl.handle.net/20.500.11767/117325