Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep

Autor: Elisabetta Iavarone, Jane Simko, Ying Shi, Marine Bertschy, María García-Amado, Polina Litvak, Anna-Kristin Kaufmann, Christian O’Reilly, Oren Amsalem, Marwan Abdellah, Grigori Chevtchenko, Benoît Coste, Jean-Denis Courcol, András Ecker, Cyrille Favreau, Adrien Christian Fleury, Werner Van Geit, Michael Gevaert, Nadir Román Guerrero, Joni Herttuainen, Genrich Ivaska, Samuel Kerrien, James G. King, Pramod Kumbhar, Patrycja Lurie, Ioannis Magkanaris, Vignayanandam Ravindernath Muddapu, Jayakrishnan Nair, Fernando L. Pereira, Rodrigo Perin, Fabien Petitjean, Rajnish Ranjan, Michael Reimann, Liviu Soltuzu, Mohameth François Sy, M. Anıl Tuncel, Alexander Ulbrich, Matthias Wolf, Francisco Clascá, Henry Markram, Sean L. Hill

Publikováno v: Cell Reports, Vol 42, Iss 3, Pp 112200- (2023)

Summary: Thalamoreticular circuitry plays a key role in arousal, attention, cognition, and sleep spindles, and is linked to several brain disorders. A detailed computational model of mouse somatosensory thalamus and thalamic reticular nucleus has bee

Externí odkaz: https://doaj.org/article/61e01f7cded14b0682d1a88e3e0db62b

MOD2IR: High-Performance Code Generation for a Biophysically Detailed Neuronal Simulation DSL

Autor: George Mitenkov, Ioannis Magkanaris, Omar Awile, Pramod Kumbhar, Felix Schürmann, Alastair F. Donaldson

Publikováno v: Proceedings of the 32nd ACM SIGPLAN International Conference on Compiler Construction.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::cc027373b93ab3be8f20e5f64832a158
https://doi.org/10.1145/3578360.3580268

GPU Implementation of Neural-Network Simulations based on Adaptive-Exponential Models

Autor: Alexandros Neofytou, Ioannis Magkanaris, George Smaragdos, Dimitrios Soudris, Christos Strydis, George Chatzikonstantis

Publikováno v: Proceedings-2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019, 339-343
STARTPAGE=339;ENDPAGE=343;TITLE=Proceedings-2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019
BIBE
2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE)
IEEE Symposium on Bioinformatics and Bioengineering (BIBE)

Detailed brain modeling has been presenting significant challenges to the world of high-performance computing (HPC), posing computational problems that can benefit from modern hardware-acceleration technologies. We explore the capacity of GPUs for si

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a407a09a7319b8553b32e7b0dabed219
https://zenodo.org/record/3716318

Modernizing the NEURON Simulator for Sustainability, Portability, and Performance

Autor: Omar Awile, Pramod Kumbhar, Nicolas Cornu, Salvador Dura-Bernal, James Gonzalo King, Olli Lupton, Ioannis Magkanaris, Robert A. McDougal, Adam J.H. Newton, Fernando Pereira, Alexandru Săvulescu, Nicholas T. Carnevale, William W. Lytton, Michael L. Hines, Felix Schürmann

The need for reproducible, credible, multiscale biological modeling has led to the development of standardized simulation platforms, such as the widely-used NEURON environment for computational neuroscience. Developing and maintaining NEURON over sev

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8b276b6eacf7e6153764dc12e2eb9fde
https://infoscience.epfl.ch/record/295558

Modernizing the NEURON Simulator for Sustainability, Portability, and Performance.

Autor: Awile, Omar, Kumbhar, Pramod, Cornu, Nicolas, Dura-Bernal, Salvador, King, James Gonzalo, Lupton, Olli, Magkanaris, Ioannis, McDougal, Robert A., Newton, Adam J. H., Pereira, Fernando, Săvulescu, Alexandru, Carnevale, Nicholas T., Lytton, William W., Hines, Michael L., Schürmann, Felix

Publikováno v: Frontiers in Neuroinformatics; 6/27/2022, Vol. 16, p1-21, 21p