Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Ioanna Kalvari"'
Autor:
Agathangelos Chatzichristofi, Vasileios Sagris, Aristos Pallaris, Marios Eftychiou, Ioanna Kalvari, Nicholas Price, Theodosios Theodosiou, Ioannis Iliopoulos, Ioannis P. Nezis, Vasilis J Promponas
Several selective macroautophagy receptor and adaptor proteins bind members of the Autophagy-related protein 8 (Atg8) family using short linear motifs (SLiMs), most often referred to as Atg8-interacting motifs (AIM) or LC3-interacting motifs (LIR). A
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::535ea7817f21996495da74b448bba73e
https://doi.org/10.1101/2022.06.21.496832
https://doi.org/10.1101/2022.06.21.496832
Autor:
Alex Bateman, Dimitra Karagkouni, Robin R. Gutell, Lina Ma, Ruth C. Lovering, Prita Mani, Artemis G. Hatzigeorgiou, Pieter-Jan Volders, Elspeth A. Bruford, Simon Kay, Kevin J. Peterson, Lauren M. Lui, Steven J Marygold, Todd M. Lowe, Jamie J. Cannone, Anton S. Petrov, Patricia P. Chan, Robert D. Finn, Adam Frankish, Stefan E. Seemann, David Hoksza, Bastian Fromm, Ioanna Kalvari, Maciej Szymanski, Ruth L. Seal, Ruth Barshir, Pieter Mestdagh, Simona Panni, Carlos Eduardo Ribas, Michelle S. Scott, Pablo Porras, Simon Fishilevich, Anton I. Petrov, Sam Griffiths-Jones, Blake A. Sweeney, Zhang Zhang, Jonathan M. Mudge, Zasha Weinberg, Sridhar Ramachandran, Jan Gorodkin, Shuai Weng, Eric P. Nawrocki, Wojciech M. Karlowski, Barbara Kramarz, Philia Bouchard-Bourelle, Gil dos Santos
Publikováno v:
Sweeney, B A, Petrov, A I, Ribas, C E, Finn, R D, Bateman, A, Szymanski, M, Karlowski, W M, Seemann, S E, Gorodkin, J, Cannone, J J, Gutell, R R, Kay, S, Marygold, S, Dos Santos, G, Frankish, A, Mudge, J M, Barshir, R, Fishilevich, S, Chan, P P, Lowe, T M, Seal, R, Bruford, E, Panni, S, Porras, P, Karagkouni, D, Hatzigeorgiou, A G, Ma, L, Zhang, Z, Volders, P J, Mestdagh, P, Griffiths-Jones, S, Fromm, B, Peterson, K J, Kalvari, I, Nawrocki, E P, Petrov, A S, Weng, S, Bouchard-Bourelle, P, Scott, M, Lui, L M, Hoksza, D, Lovering, R C, Kramarz, B, Mani, P, Ramachandran, S & Weinberg, Z 2021, ' RNAcentral 2021 : Secondary structure integration, improved sequence search and new member databases ', Nucleic Acids Research, vol. 49, no. D1, pp. D212-D220 . https://doi.org/10.1093/nar/gkaa921
NUCLEIC ACIDS RESEARCH
Nucleic Acids Research
NUCLEIC ACIDS RESEARCH
Nucleic Acids Research
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that provides a single access point to 44 RNA resources and >18 million ncRNA sequences from a wide range of organisms and RNA types. RNAcentral now also includes secondary (2
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e19e03b750a9a147992e2137ae30e05
https://curis.ku.dk/ws/files/259671035/gkaa921.pdf
https://curis.ku.dk/ws/files/259671035/gkaa921.pdf
Autor:
Joanna Argasinska, Sean R. Eddy, Ioanna Kalvari, Elena Rivas, Anton I. Petrov, Kevin Lamkiewicz, Alex Bateman, Robert D. Finn, Daniel Gautheret, Sam Griffiths-Jones, Manja Marz, Nancy Ontiveros-Palacios, Eric P. Nawrocki, Zasha Weinberg, Claire Toffano-Nioche
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1047⟩
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1047⟩
Rfam is a database of RNA families where each of the 3444 families is represented by a multiple sequence alignment of known RNA sequences and a covariance model that can be used to search for additional members of the family. Recent developments have
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f872b8575e7e704d35a8c2c0e7bf9821
Autor:
Denise Kühnert, Vincent Navratil, Roman Martin, Marius Welzel, Franziska Hufsky, Guillermo Rangel-Pineros, Marie Hoffmann, Julian Matschinske, Robert D. Finn, Manja Marz, Hannah F. Löchel, Georges Hattab, Jan Baumbach, Stefan Hoops, Alice C. McHardy, Pedro Mendes, Kevin Lamkiewicz, Niko Beerenwinkel, Ioanna Kalvari, Joshua B Singer, Maria Jesus Martin, David Robertson, Jaina Mistry, Alexandre Almeida, Chris Upton, Markus List, Sara Chuguransky, Cecilia N. Arighi, Oliver Drechsel, Nicole Redaschi, Dominik Heider, Alex Bateman, Lorna Richardson, Christian Brandt, Pieter Libin, Adrian Fritz, Anton I. Petrov, Lars Kaderali, Knut Reinert, Lowri Williams, Max von Kleist, Áine O'Toole, Abdel Aouacheria, Martin Hölzer, Nancy Ontiveros-Palacios, Susanne Reimering, Kristof Theys, Stephan Fuchs, Anne-Christin Hauschild, Sepideh Sadegh, Gorka Lasso, Marco Cacciabue, Eric P. Nawrocki, Alejandro Reyes, Renó Kmiecinski
Publikováno v:
Briefings in Bioinformatics
Briefings in Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bib/bbaa232⟩
Preprints
Briefings in bioinformatics
England
Hufsky, F, Lamkiewicz, K, Almeida, A, Aouacheria, A, Arighi, C, Bateman, A, Baumbach, J, Beerenwinkel, N, Brandt, C, Cacciabue, M, Chuguransky, S, Drechsel, O, Finn, R D, Fritz, A, Fuchs, S, Hattab, G, Hauschild, A-C, Heider, D, Hoffmann, M, Hölzer, M, Hoops, S, Kaderali, L, Kalvari, I, von Kleist, M, Kmiecinski, R, Kühnert, D, Lasso, G, Libin, P, List, M, Löchel, H F, Martin, M J, Martin, R, Matschinske, J, McHardy, A C, Mendes, P, Mistry, J, Navratil, V, Nawrocki, E P, O'Toole, A N, Ontiveros-Palacios, N, Petrov, A I, Rangel-Pineros, G, Redaschi, N, Reimering, S, Reinert, K, Reyes, A, Richardson, L, Robertson, D L, Sadegh, S, Singer, J B, Theys, K, Upton, C, Welzel, M, Williams, L & Marz, M 2021, ' Computational strategies to combat COVID-19 : useful tools to accelerate SARS-CoV-2 and coronavirus research ', Briefings in Bioinformatics, vol. 22, no. 2, pp. 642-663 . https://doi.org/10.1093/bib/bbaa232
Briefings in Bioinformatics, 22 (2)
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Preprints.org
Briefings in Bioinformatics, 2020, ⟨10.1093/bib/bbaa232⟩
Briefings in Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bib/bbaa232⟩
Preprints
Briefings in bioinformatics
England
Hufsky, F, Lamkiewicz, K, Almeida, A, Aouacheria, A, Arighi, C, Bateman, A, Baumbach, J, Beerenwinkel, N, Brandt, C, Cacciabue, M, Chuguransky, S, Drechsel, O, Finn, R D, Fritz, A, Fuchs, S, Hattab, G, Hauschild, A-C, Heider, D, Hoffmann, M, Hölzer, M, Hoops, S, Kaderali, L, Kalvari, I, von Kleist, M, Kmiecinski, R, Kühnert, D, Lasso, G, Libin, P, List, M, Löchel, H F, Martin, M J, Martin, R, Matschinske, J, McHardy, A C, Mendes, P, Mistry, J, Navratil, V, Nawrocki, E P, O'Toole, A N, Ontiveros-Palacios, N, Petrov, A I, Rangel-Pineros, G, Redaschi, N, Reimering, S, Reinert, K, Reyes, A, Richardson, L, Robertson, D L, Sadegh, S, Singer, J B, Theys, K, Upton, C, Welzel, M, Williams, L & Marz, M 2021, ' Computational strategies to combat COVID-19 : useful tools to accelerate SARS-CoV-2 and coronavirus research ', Briefings in Bioinformatics, vol. 22, no. 2, pp. 642-663 . https://doi.org/10.1093/bib/bbaa232
Briefings in Bioinformatics, 22 (2)
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Preprints.org
Briefings in Bioinformatics, 2020, ⟨10.1093/bib/bbaa232⟩
SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causesthe infectious disease COVID-19. The biology of coronaviruses has been studied for many years. However, bioinformaticstools des
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7cc1ebc9849708c6b19e128f12d7c8fc
Autor:
Alex Bateman, Robert D. Finn, Joanna Argasinska, Sean R. Eddy, Ioanna Kalvari, Anton I. Petrov, Elena Rivas, Natalia Quinones-Olvera, Eric P. Nawrocki
Publikováno v:
Nucleic Acids Research
The Rfam database is a collection of RNA families in which each family is represented by a multiple sequence alignment, a consensus secondary structure, and a covariance model. In this paper we introduce Rfam release 13.0, which switches to a new gen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c2073cd2278000d367fee68d6d3bfd6
https://doi.org/10.1093/nar/gkx1038
https://doi.org/10.1093/nar/gkx1038
Autor:
Joanna Argasinska, Natalia Quinones-Olvera, Robert D. Finn, Ioanna Kalvari, Eric P. Nawrocki, Alex Bateman, Anton I. Petrov
Rfam is a database of non-coding RNA families in which each family is represented by a multiple sequence alignment, a consensus secondary structure, and a covariance model. Using a combination of manual and literature-based curation and a custom soft
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b66f12125cb6fa087ad509211a01f292
https://europepmc.org/articles/PMC6754622/
https://europepmc.org/articles/PMC6754622/
Autor:
Naoya Kenmochi, Steven J Marygold, Kostantinos Billis, Stefan E. Seemann, Robin R. Gutell, Simon Kay, Judith A. Blake, Blake A. Sweeney, Dimitra Karagkouni, Zhang Zhang, Jo Vandesompele, Yi Zhao, Marcel E. Dinger, Todd M. Lowe, Ruth C. Lovering, Maciej Szymanski, Peter F. Stadler, J. Michael Cherry, Pietro Boccaletto, Stacia R. Engel, David B. Emmert, Jan Gorodkin, Ruth L. Seal, Pieter-Jan Volders, Silva Team, Kelly P. Williams, Rachael P. Huntley, Jamie J. Cannone, Ioanna Kalvari, Kevin L. Howe, Artemis G. Hatzigeorgiou, Anton I. Petrov, Paul H. Davis, Sam Griffiths-Jones, Petra Fey, Patricia P. Chan, Valerie Wood, S. Basu, Maria D. Paraskevopoulou, Boris Burkov, Shunmin He, Janusz M. Bujnicki, Runsheng Chen, Alex Bateman, Tanya Z. Berardini, Eric P. Nawrocki, Elena Rivas, Wojciech M. Karlowski, Robert D. Finn, Maki Yoshihama, Mary Shimoyama, Guy Cochrane, M Orlic-Milacic, James R. Cole, Carol J. Bult, Adam Frankish, Stanley J. F. Laulederkind, Lina Ma, Elspeth A. Bruford, Marc Gillespie, Kim Rutherford
Publikováno v:
NUCLEIC ACIDS RESEARCH
The RNAcentral Consortium & Griffiths-Jones, S 2019, ' RNAcentral : a hub of information for non-coding RNA sequences ', Nucleic acids research, vol. 47, no. D1, pp. D221-D229 . https://doi.org/10.1093/nar/gky1034
Nucleic Acids Research (London)
The RNAcentral Constortium, Gorodkin, J & Seemann, E S 2019, ' RNAcentral : a hub of information for non-coding RNA sequences ', Nucleic Acids Research, vol. 47, no. D1, pp. D221–D229 . https://doi.org/10.1093/nar/gky1034
Nucleic Acids Research
The RNAcentral Consortium & Griffiths-Jones, S 2019, ' RNAcentral : a hub of information for non-coding RNA sequences ', Nucleic acids research, vol. 47, no. D1, pp. D221-D229 . https://doi.org/10.1093/nar/gky1034
Nucleic Acids Research (London)
The RNAcentral Constortium, Gorodkin, J & Seemann, E S 2019, ' RNAcentral : a hub of information for non-coding RNA sequences ', Nucleic Acids Research, vol. 47, no. D1, pp. D221–D229 . https://doi.org/10.1093/nar/gky1034
Nucleic Acids Research
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating information on ncRNA sequences of all types from a broad range of organisms. We have recently added a new genome mapping pipeline that identifies genomic locations
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2d8df7731f36daaaa613be0bfa0e280e
https://doi.org/10.1093/nar/gky1206
https://doi.org/10.1093/nar/gky1206
Autor:
Clarissa Gerhäuser, Rajendra G. Mehta, Christiana M. Neophytou, Christos A. Nicolaou, Constantinos S. Pattichis, George Lambrinidis, Andreas I. Constantinou, Chara A. Pitta, Zinonas C. Antoniou, David Scherf, Ioannis Kirmitzoglou, Emanuel Mikros, Vasilis J. Promponas, Christiana G. Savva, Kleo G. Achilleos, Christos C. Kannas, Ioanna Kalvari
Publikováno v:
Scopus-Elsevier
Modern methods of drug discovery and development in recent years make a wide use of computational algorithms. These methods utilise Virtual Screening (VS), which is the computational counterpart of experimental screening. In this manner the in silico
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b9b1b19bcc5f1f5e1ba8fedb9c5111d4
http://www.scopus.com/inward/record.url?eid=2-s2.0-84931260350&partnerID=MN8TOARS
http://www.scopus.com/inward/record.url?eid=2-s2.0-84931260350&partnerID=MN8TOARS