Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Ingvar Lagerstedt"'
Autor:
Ardan Patwardhan, Robert Brandt, Sarah J Butcher, Lucy Collinson, David Gault, Kay Grünewald, Corey Hecksel, Juha T Huiskonen, Andrii Iudin, Martin L Jones, Paul K Korir, Abraham J Koster, Ingvar Lagerstedt, Catherine L Lawson, David Mastronarde, Matthew McCormick, Helen Parkinson, Peter B Rosenthal, Stephan Saalfeld, Helen R Saibil, Sirarat Sarntivijai, Irene Solanes Valero, Sriram Subramaniam, Jason R Swedlow, Ilinca Tudose, Martyn Winn, Gerard J Kleywegt
Publikováno v:
eLife, Vol 6 (2017)
The integration of cellular and molecular structural data is key to understanding the function of macromolecular assemblies and complexes in their in vivo context. Here we report on the outcomes of a workshop that discussed how to integrate structura
Externí odkaz:
https://doaj.org/article/894e26f1fe364e90b4d2256c2a6eedf1
Autor:
Steven J. Ludtke, John D. Westbrook, Matthew L. Baker, Wah Chiu, Ardan Patwardhan, Raul Sala, Eduardo Sanz Garcia, Corey F. Hryc, Grigore D. Pintilie, Gerard J. Kleywegt, Catherine L. Lawson, Ingvar Lagerstedt, Brian P. Hudson, Helen M. Berman
Publikováno v:
Nucleic Acids Research
Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from molecules to cells. The EMDataBank project provides a unified portal for deposition, retrieval a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c51a0902d92a8de5976ef7ff271583a3
https://doi.org/10.1093/nar/gkv1126
https://doi.org/10.1093/nar/gkv1126
Autor:
Helen R. Saibil, Helen Parkinson, Matt McCormick, Peter B. Rosenthal, Sriram Subramaniam, Catherine L. Lawson, Andrii Iudin, Stephan Saalfeld, Martin L. Jones, Lucy M. Collinson, Gerard J. Kleywegt, Sarah J. Butcher, Ardan Patwardhan, Ilinca Tudose, Martyn Winn, Abraham J. Koster, Paul K. Korir, David Gault, Robert Brandt, Ingvar Lagerstedt, Corey W. Hecksel, Jason R. Swedlow, David N. Mastronarde, Sirarat Sarntivijai, Juha T. Huiskonen, Kay Grünewald, Irene Solanes Valero
Publikováno v:
eLife, Vol 6 (2017)
eLife
eLife
The integration of cellular and molecular structural data is key to understanding the function of macromolecular assemblies and complexes in their in vivo context. Here we report on the outcomes of a workshop that discussed how to integrate structura
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8cc54c7009b83401fe2021461a68c5d0
https://elifesciences.org/articles/25835
https://elifesciences.org/articles/25835
Autor:
Juha T. Huiskonen, Irene Solanes Valero, Martin L. Jones, Helen R. Saibil, Lucy M. Collinson, Matt McCormick, Helen Parkinson, Martyn Winn, Ardan Patwardhan, Abraham J. Koster, Andrii Iudin, Robert Brandt, Ilinca Tudose, Kay Grünewald, Stephan Saalfeld, Corey W. Hecksel, Catherine L. Lawson, Peter B. Rosenthal, Gerard J. Kleywegt, Paul K. Korir, Sarah J. Butcher, David N. Mastronarde, David Gault, Sirarat Sarntivijai, Ingvar Lagerstedt, Jason R. Swedlow, Sriram Subramaniam
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e4ad5b8334488c42feb765499b788e2f
https://doi.org/10.7554/elife.25835.008
https://doi.org/10.7554/elife.25835.008
Autor:
Ardan Patwardhan, Gerard J. Kleywegt, Eduardo Sanz-García, William J. Moore, Ingvar Lagerstedt, Jason R. Swedlow, Christoph Best
Publikováno v:
Journal of Structural Biology
The Protein Data Bank in Europe (PDBe) has developed web-based tools for the visualisation and analysis of 3D electron microscopy (3DEM) structures in the Electron Microscopy Data Bank (EMDB) and Protein Data Bank (PDB). The tools include: (1) a volu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96919246e5641ce20b099dbdfaea9270
https://doi.org/10.1016/j.jsb.2013.09.021
https://doi.org/10.1016/j.jsb.2013.09.021
Publikováno v:
Journal of Structural Biology
Recent developments in 3-dimensional electron microcopy (3D-EM) techniques and a concomitant drive to look at complex molecular structures, have led to a rapid increase in the amount of volume data available for biomolecules. This creates a demand fo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0210559e8c7e483d057bf0a5d1bf7c90
https://pubmed.ncbi.nlm.nih.gov/28552721
https://pubmed.ncbi.nlm.nih.gov/28552721
Autor:
Josh Moore, Scott Loynton, Jason R. Swedlow, Christoph Best, Ingvar Lagerstedt, William J. Moore, Chris Allan, Donald MacDonald, Michael Porter, Jean-Marie Burel, Simone Leo, Katherine Hands, Ronald T. Hay, Brian Loranger, Jerome Avondo, Luca Lianas, Andrew J. Patterson, Colin Blackburn, Carlos H. Neves, Gianluigi Zanetti, Aleksandra Tarkowska, Ardan Patwardhan, Gerard J. Kleywegt, Melissa Linkert
Publikováno v:
Nature methods
Data-intensive research depends on tools that manage multi-dimensional, heterogeneous data sets. We have built OME Remote Objects (OMERO), a software platform that enables access to and use of a wide range of biological data. OMERO uses a server-base
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1eda2436e2762d296cba0ba8c6d6daed
https://doi.org/10.1038/nmeth.1896
https://doi.org/10.1038/nmeth.1896
Autor:
Sameer, Velankar, Younes, Alhroub, Anaëlle, Alili, Christoph, Best, Harry C, Boutselakis, Ségolène, Caboche, Matthew J, Conroy, Jose M, Dana, Glen, van Ginkel, Adel, Golovin, Swanand P, Gore, Aleksandras, Gutmanas, Pauline, Haslam, Miriam, Hirshberg, Melford, John, Ingvar, Lagerstedt, Saqib, Mir, Laurence E, Newman, Tom J, Oldfield, Chris J, Penkett, Jorge, Pineda-Castillo, Luana, Rinaldi, Gaurav, Sahni, Grégoire, Sawka, Sanchayita, Sen, Robert, Slowley, Alan Wilter, Sousa da Silva, Antonio, Suarez-Uruena, G Jawahar, Swaminathan, Martyn F, Symmons, Wim F, Vranken, Michael, Wainwright, Gerard J, Kleywegt
Publikováno v:
Nucleic Acids Research
The Protein Data Bank in Europe (PDBe; pdbe.org) is actively involved in managing the international archive of biomacromolecular structure data as one of the partners in the Worldwide Protein Data Bank (wwPDB; wwpdb.org). PDBe also develops new tools
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::909420b807ca0f164a3c162f52dd2f54
https://doi.org/10.1093/nar/gkq985
https://doi.org/10.1093/nar/gkq985
Autor:
Batsal Devkota, I. Rees, Wah Chiu, Matthew T. Dougherty, Catherine L. Lawson, Gerard J. Kleywegt, John D. Westbrook, Ingvar Lagerstedt, Joe D. Warren, Chunxiao Bi, Glen van Ginkel, Christoph Best, Powei Feng, Kim Henrick, Sameer Velankar, Raul Sala, Matthew L. Baker, Gaurav Sahni, Thomas J. Oldfield, Steven J. Ludtke, Helen M. Berman, Richard H. Newman
Publikováno v:
Nucleic Acids Research
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. EMDataBank.org, a joint effort of the Protein Data Bank in Europe (PDBe), the Research Collaboratory
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c33ff004f0ab41b8059b1e4b098970b4
http://europepmc.org/articles/PMC3013769
http://europepmc.org/articles/PMC3013769
A software pipeline, named SMaSB, was previously developed to perform the volume/shape matching that underpins the set of tools being developed in WP9. These tools are novel in providing access to a growing class of structural biology data viz. volum
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::489638f2b7ade5f9707697e57cc62d0b