Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Ilya B, Slizovskiy"'
Autor:
Ilya B. Slizovskiy, Marco Oliva, Jonathen K. Settle, Lidiya V. Zyskina, Mattia Prosperi, Christina Boucher, Noelle R. Noyes
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-24 (2022)
Abstract Background Metagenomic data can be used to profile high-importance genes within microbiomes. However, current metagenomic workflows produce data that suffer from low sensitivity and an inability to accurately reconstruct partial or full geno
Externí odkaz:
https://doaj.org/article/d5dfa1529441450bbc40f8fc1d41287b
Autor:
Gowri Nayar, Ignacio Terrizzano, Ed Seabolt, Akshay Agarwal, Christina Boucher, Jaime Ruiz, Ilya B. Slizovskiy, James H. Kaufman, Noelle R. Noyes
Publikováno v:
Frontiers in Genetics, Vol 13 (2022)
Horizontal gene transfer mediated by conjugation is considered an important evolutionary mechanism of bacteria. It allows organisms to quickly evolve new phenotypic properties including antimicrobial resistance (AMR) and virulence. The frequency of c
Externí odkaz:
https://doaj.org/article/e92efee6dede40778680f04fcac97b5b
Autor:
Simone Marini, Marco Oliva, Ilya B. Slizovskiy, Noelle Robertson Noyes, Christina Boucher, Mattia Prosperi
Publikováno v:
Frontiers in Genetics, Vol 12 (2021)
Antimicrobial resistance (AMR) is a significant and growing public health threat. Sequencing of bacterial isolates is becoming more common, and therefore automatic identification of resistant bacterial strains is of pivotal importance for efficient,
Externí odkaz:
https://doaj.org/article/3ab13cef5923467c9e71e213f63cbdad
Autor:
Ilya B. Slizovskiy, Kingshuk Mukherjee, Christopher J. Dean, Christina Boucher, Noelle R. Noyes
Publikováno v:
Frontiers in Microbiology, Vol 11 (2020)
Antimicrobial resistance (AMR) poses a global human and animal health threat, and predicting AMR persistence and transmission remains an intractable challenge. Shotgun metagenomic sequencing can help overcome this by enabling characterization of AMR
Externí odkaz:
https://doaj.org/article/211b2b5ea5fd43eda6d0695b29721569
Autor:
Jarno N Alanko, Ilya B Slizovskiy, Daniel Lokshtanov, Travis Gagie, Noelle R Noyes, Christina Boucher
Motivation Bait enrichment is a protocol that is becoming increasingly ubiquitous as it has been shown to successfully amplify regions of interest in metagenomic samples. In this method, a set of synthetic probes (‘baits’) are designed, manufactu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca7520404a2b445e955631a2dbe901bc
http://hdl.handle.net/10138/345967
http://hdl.handle.net/10138/345967
Autor:
Luciano Caixeta, K.K. Crone, Christopher J Dean, Bradley J Heins, Noelle R. Noyes, A.X. Pfennig, Ilya B. Slizovskiy
Publikováno v:
Journal of Dairy Science. 104:644-661
There is a need for standardized, efficient, and practical sampling methods to support large population-based studies of the internal and external epithelial microbiomes of the bovine udder. The primary objective of this study was to evaluate differe
Autor:
Noelle R. Noyes, Ilya B. Slizovskiy, Jarno Alanko, Christina Boucher, Daniel Lokshtanov, Travis Gagie
Bait-enriched sequencing is a relatively new sequencing protocol that is becoming increasingly ubiquitous as it has been shown to successfully amplify regions of interest in metagenomic samples. In this method, a set of synthetic probes (“baits”)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::78fa52caae5b945c849effb52bc7a293
https://doi.org/10.1101/2021.11.05.467426
https://doi.org/10.1101/2021.11.05.467426
Autor:
Edward E. Seabolt, Ignacio Terrizzano, Ilya B. Slizovskiy, James H. Kaufman, Akshay Agarwal, Noelle R. Noyes, Gowri Nayar
Horizontal gene transfer mediated by integrative and conjugative elements (ICE) is considered an important evolutionary mechanism of bacteria. It allows organisms to quickly evolve new phenotypic properties including antimicrobial resistance (AMR) an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e54876a1f9d4caf650470ced8823ba3
https://doi.org/10.1101/2020.04.07.030320
https://doi.org/10.1101/2020.04.07.030320
Autor:
Ilya B. Slizovskiy, V. T. Lamers, Peter M. Rabinowitz, Meredith H. Stowe, Sally Trufan, James Dziura, Lisa A. Conti, John S. Reif
Publikováno v:
Journal of Environmental Science and Health, Part A. 50:473-481
Natural gas extraction activities, including the use of horizontal drilling and hydraulic fracturing, may pose potential health risks to both human and animal populations in close proximity to sites of extraction activity. Because animals may have in
Autor:
Theodore R. Holford, Ilya B. Slizovskiy, Peter M. Rabinowitz, Peter Peduzzi, Theresa R. Weiss, Michael J. Kane, Sally Trufan, Vanessa Lamers, John S. Reif, Meredith H. Stowe, James Dziura
Publikováno v:
Environmental Health Perspectives
Background: Little is known about the environmental and public health impact of unconventional natural gas extraction activities, including hydraulic fracturing, that occur near residential areas. Objectives: Our aim was to assess the relationship be