Zobrazeno 1 - 10
of 65
pro vyhledávání: '"Ilene Karsch, Mizrachi"'
Autor:
Amber Hartman Scholz, Jens Freitag, Christopher H. C. Lyal, Rodrigo Sara, Martha Lucia Cepeda, Ibon Cancio, Scarlett Sett, Andrew Lee Hufton, Yemisrach Abebaw, Kailash Bansal, Halima Benbouza, Hamadi Iddi Boga, Sylvain Brisse, Michael W. Bruford, Hayley Clissold, Guy Cochrane, Jonathan A. Coddington, Anne-Caroline Deletoille, Felipe García-Cardona, Michelle Hamer, Raquel Hurtado-Ortiz, Douglas W. Miano, David Nicholson, Guilherme Oliveira, Carlos Ospina Bravo, Fabian Rohden, Ole Seberg, Gernot Segelbacher, Yogesh Shouche, Alejandra Sierra, Ilene Karsch-Mizrachi, Jessica da Silva, Desiree M. Hautea, Manuela da Silva, Mutsuaki Suzuki, Kassahun Tesfaye, Christian Keambou Tiambo, Krystal A. Tolley, Rajeev Varshney, María Mercedes Zambrano, Jörg Overmann
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-5 (2022)
Ensuring international benefit-sharing from sequence data without jeopardising open sharing is a major obstacle for the Convention on Biological Diversity and other UN negotiations. Here, the authors propose a solution to address the concerns of both
Externí odkaz:
https://doaj.org/article/04046138de3d46309db2cbdac3ac379d
Autor:
Alejandro A. Schäffer, Richard McVeigh, Barbara Robbertse, Conrad L. Schoch, Anjanette Johnston, Beverly A. Underwood, Ilene Karsch-Mizrachi, Eric P. Nawrocki
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-29 (2021)
Abstract Background The DNA sequences encoding ribosomal RNA genes (rRNAs) are commonly used as markers to identify species, including in metagenomics samples that may combine many organismal communities. The 16S small subunit ribosomal RNA (SSU rRNA
Externí odkaz:
https://doaj.org/article/412e9609c2254fe2a8ac5960d0acd686
Autor:
Alejandro A. Schäffer, Eneida L. Hatcher, Linda Yankie, Lara Shonkwiler, J. Rodney Brister, Ilene Karsch-Mizrachi, Eric P. Nawrocki
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-23 (2020)
Abstract Background GenBank contains over 3 million viral sequences. The National Center for Biotechnology Information (NCBI) previously made available a tool for validating and annotating influenza virus sequences that is used to check submissions t
Externí odkaz:
https://doaj.org/article/5bd21d2d504b4fc3b7c7d6ad93c9efb9
Autor:
Emma Griffiths, Catarina Inês Mendes, Finlay Maguire, Jennifer Guthrie, Leonid Chindelevitch, Ilene Karsch-Mizrachi, Zahra Waheed, Rhiannon Cameron, Kathryn Holt, Lee Katz, Robert Petit III, Duncan MacCannell, Mugdha Dave, Paul Oluniyi, Muhammad Ibtisam Nasar, Amogelang Raphenya, William Hsiao, Ruth Timme
As public health laboratories expand their genomic sequencing and bioinformatics capacity for the surveillance of different pathogens, labs must carry out robust validation, training, and optimization of wet- and dry-lab procedures. Achieving these g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6dc5f7158c66bf145be07f5f7bc6fdde
https://doi.org/10.20944/preprints202303.0037.v1
https://doi.org/10.20944/preprints202303.0037.v1
Autor:
Eric W Sayers, Mark Cavanaugh, Karen Clark, Kim D Pruitt, Stephen T Sherry, Linda Yankie, Ilene Karsch-Mizrachi
Publikováno v:
Nucleic Acids Res
GenBank® (https://www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public database that contains 19.6 trillion base pairs from over 2.9 billion nucleotide sequences for 504 000 formally described species. Daily data exchange with the European Nucl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d51272d810dc1175be6ccc94e1a9a670
https://europepmc.org/articles/PMC9825519/
https://europepmc.org/articles/PMC9825519/
Autor:
Emma J Griffiths, Ruth E Timme, Catarina Inês Mendes, Andrew J Page, Nabil-Fareed Alikhan, Dan Fornika, Finlay Maguire, Josefina Campos, Daniel Park, Idowu B Olawoye, Paul E Oluniyi, Dominique Anderson, Alan Christoffels, Anders Gonçalves da Silva, Rhiannon Cameron, Damion Dooley, Lee S Katz, Allison Black, Ilene Karsch-Mizrachi, Tanya Barrett, Anjanette Johnston, Thomas R Connor, Samuel M Nicholls, Adam A Witney, Gregory H Tyson, Simon H Tausch, Amogelang R Raphenya, Brian Alcock, David M Aanensen, Emma Hodcroft, William W L Hsiao, Ana Tereza R Vasconcelos, Duncan R MacCannell
Background The Public Health Alliance for Genomic Epidemiology (PHA4GE) (https://pha4ge.org) is a global coalition that is actively working to establish consensus standards, document and share best practices, improve the availability of critical bioi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bfe37af684af3cd72d1159bab2e1aecd
https://orca.cardiff.ac.uk/id/eprint/147841/1/future-proofing_gigascience.pdf
https://orca.cardiff.ac.uk/id/eprint/147841/1/future-proofing_gigascience.pdf
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2443
GenBank
Autor:
Beverly A Underwood, Linda Yankie, Eric P Nawrocki, Vasuki Palanigobu, Sergiy Gotvyanskyy, Vincent C Calhoun, Michael Kornbluh, Thomas G Smith, Lydia Fleischmann, Denis Sinyakov, Colleen J Bollin, Ilene Karsch-Mizrachi
Publikováno v:
Database (Oxford)
Rapid response to the current coronavirus disease 2019 (COVID-19) pandemic requires fast dissemination of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genomic sequence data in order to align diagnostic tests and vaccines with the natu
Publikováno v:
Plant Bioinformatics ISBN: 9781071620663
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::459a89200f644f768475aa77f9ee1b12
https://doi.org/10.1007/978-1-0716-2067-0_1
https://doi.org/10.1007/978-1-0716-2067-0_1
Autor:
Vivien G Dugan, Scott J Emrich, Gloria I Giraldo-Calderón, Omar S Harb, Ruchi M Newman, Brett E Pickett, Lynn M Schriml, Timothy B Stockwell, Christian J Stoeckert, Dan E Sullivan, Indresh Singh, Doyle V Ward, Alison Yao, Jie Zheng, Tanya Barrett, Bruce Birren, Lauren Brinkac, Vincent M Bruno, Elizabet Caler, Sinéad Chapman, Frank H Collins, Christina A Cuomo, Valentina Di Francesco, Scott Durkin, Mark Eppinger, Michael Feldgarden, Claire Fraser, W Florian Fricke, Maria Giovanni, Matthew R Henn, Erin Hine, Julie Dunning Hotopp, Ilene Karsch-Mizrachi, Jessica C Kissinger, Eun Mi Lee, Punam Mathur, Emmanuel F Mongodin, Cheryl I Murphy, Garry Myers, Daniel E Neafsey, Karen E Nelson, William C Nierman, Julia Puzak, David Rasko, David S Roos, Lisa Sadzewicz, Joana C Silva, Bruno Sobral, R Burke Squires, Rick L Stevens, Luke Tallon, Herve Tettelin, David Wentworth, Owen White, Rebecca Will, Jennifer Wortman, Yun Zhang, Richard H Scheuermann
Publikováno v:
PLoS ONE, Vol 9, Iss 6, p e99979 (2014)
High throughput sequencing has accelerated the determination of genome sequences for thousands of human infectious disease pathogens and dozens of their vectors. The scale and scope of these data are enabling genotype-phenotype association studies to
Externí odkaz:
https://doaj.org/article/7ea0c224c6f4484e9585bedb61a17966