Zobrazeno 1 - 10 of 32 pro vyhledávání: '"Iha BKV"'
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Publisher Correction: Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium.
Autor: Flores VS; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil., Amgarten DE; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil., Iha BKV; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil., Ryon KA; Weill Cornell Medicine, New York, NY, USA., Danko D; Biotia, New York, NY, USA., Tierney BT; Weill Cornell Medicine, New York, NY, USA.; Harvard Medical School, Cambridge, MA, USA., Mason C; Weill Cornell Medicine, New York, NY, USA., da Silva AM; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil. almsilva@iq.usp.br., Setubal JC; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil. setubal@iq.usp.br.
Publikováno v: Scientific reports [Sci Rep] 2024 May 10; Vol. 14 (1), pp. 10731. Date of Electronic Publication: 2024 May 10.
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2
Akademický článek
Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium.
Autor: Flores VS; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil., Amgarten DE; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil.; Hospital Israelita Albert Einstein, São Paulo, Brazil., Iha BKV; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil., Ryon KA; Weill Cornell Medicine, New York, NY, USA., Danko D; Biotia, New York, NY, USA., Tierney BT; Weill Cornell Medicine, New York, NY, USA.; Harvard Medical School, Cambridge, MA, USA., Mason C; Weill Cornell Medicine, New York, NY, USA., da Silva AM; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil. almsilva@iq.usp.br., Setubal JC; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, 05508-000, Brazil. setubal@iq.usp.br.
Publikováno v: Scientific reports [Sci Rep] 2024 Apr 04; Vol. 14 (1), pp. 7913. Date of Electronic Publication: 2024 Apr 04.
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3
Akademický článek
vHULK, a New Tool for Bacteriophage Host Prediction Based on Annotated Genomic Features and Neural Networks.
Autor: Amgarten D; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil., Iha BKV; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil., Piroupo CM; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil., da Silva AM; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil., Setubal JC; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Publikováno v: PHAGE (New Rochelle, N.Y.) [Phage (New Rochelle)] 2022 Dec 01; Vol. 3 (4), pp. 204-212. Date of Electronic Publication: 2022 Dec 19.
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4
Akademický článek
Prediction of virus-host associations using protein language models and multiple instance learning.
Autor: Liu, Dan1 (AUTHOR), Young, Francesca1,2 (AUTHOR), Lamb, Kieran D.1 (AUTHOR), Robertson, David L.1 (AUTHOR) david.l.robertson@glasgow.ac.uk, Yuan, Ke2,3,4 (AUTHOR) ke.yuan@glasgow.ac.uk
Publikováno v: PLoS Computational Biology. 11/19/2024, Vol. 20 Issue 11, p1-25. 25p.
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5
Akademický článek
DeepPBI-KG: a deep learning method for the prediction of phage-bacteria interactions based on key genes.
Autor: Wei, Tongqing1 (AUTHOR), Lu, Chenqi1 (AUTHOR), Du, Hanxiao1 (AUTHOR), Yang, Qianru1 (AUTHOR), Qi, Xin2 (AUTHOR), Liu, Yankun2 (AUTHOR), Zhang, Yi3 (AUTHOR), Chen, Chen3 (AUTHOR), Li, Yutong1 (AUTHOR), Tang, Yuanhao1 (AUTHOR), Zhang, Wen-Hong1,2,3 (AUTHOR) ningjiang@fudan.edu.cn, Tao, Xu1,2,3 (AUTHOR) ningjiang@fudan.edu.cn, Jiang, Ning1,2,3 (AUTHOR) ningjiang@fudan.edu.cn
Publikováno v: Briefings in Bioinformatics. Nov2024, Vol. 25 Issue 6, p1-11. 11p.
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6
Akademický článek
Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks.
Autor: Bastien, G. Eric1 (AUTHOR), Cable, Rachel N.1 (AUTHOR), Batterbee, Cecelia1 (AUTHOR), Wing, A. J.1 (AUTHOR), Zaman, Luis1 (AUTHOR) zamanlh@umich.edu, Duhaime, Melissa B.1 (AUTHOR) zamanlh@umich.edu
Publikováno v: PLoS Computational Biology. 9/18/2024, Vol. 20 Issue 9, p1-21. 21p.
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7
Akademický článek
Advances in phage–host interaction prediction: in silico method enhances the development of phage therapies.
Autor: Nie, Wanchun1 (AUTHOR), Qiu, Tianyi2,3 (AUTHOR), Wei, Yiwen1 (AUTHOR), Ding, Hao2 (AUTHOR), Guo, Zhixiang1 (AUTHOR), Qiu, Jingxuan1 (AUTHOR) jxqiu@usst.edu.cn
Publikováno v: Briefings in Bioinformatics. May2024, Vol. 25 Issue 3, p1-14. 14p.
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8
Akademický článek
Zero-shot-capable identification of phage–host relationships with whole-genome sequence representation by contrastive learning.
Autor: Zhang, Yao-zhong1 (AUTHOR) yaozhong@ims.u-tokyo.ac.jp, Liu, Yunjie1 (AUTHOR), Bai, Zeheng1 (AUTHOR), Fujimoto, Kosuke2,3 (AUTHOR), Uematsu, Satoshi2,3 (AUTHOR), Imoto, Seiya1 (AUTHOR) yaozhong@ims.u-tokyo.ac.jp
Publikováno v: Briefings in Bioinformatics. Sep2023, Vol. 24 Issue 5, p1-10. 10p.
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9
Akademický článek
Advances in the field of phage-based therapy with special emphasis on computational resources.
Autor: Bajiya, Nisha1 (AUTHOR), Dhall, Anjali1 (AUTHOR), Aggarwal, Suchet2 (AUTHOR), Raghava, Gajendra P S1 (AUTHOR) raghava@iiitd.ac.in
Publikováno v: Briefings in Bioinformatics. Jan2023, Vol. 24 Issue 1, p1-15. 15p.
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10
Akademický článek
PhaTYP: predicting the lifestyle for bacteriophages using BERT.
Autor: Shang, Jiayu1 (AUTHOR), Tang, Xubo1 (AUTHOR), Sun, Yanni1 (AUTHOR) yannisun@cityu.edu.hk
Publikováno v: Briefings in Bioinformatics. Jan2023, Vol. 24 Issue 1, p1-11. 11p.
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