Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Ignacio Eguinoa"'
Publikováno v:
Research Ideas and Outcomes, Vol 8, Iss , Pp 1-4 (2022)
We introduce how the Galaxy research environment (Jalili et al. 2020) integrates with RO-Crate as an implementation of Findable Accessible Interoperable Reproducible Digital Objects (FAIR Digital Objects / FDO) (Wilkinson et al. 2016, Schultes and Wi
Externí odkaz:
https://doaj.org/article/24485ff205c645869f0681bef7e0ddae
Autor:
Paul Brack, Peter Crowther, Stian Soiland-Reyes, Stuart Owen, Douglas Lowe, Alan R Williams, Quentin Groom, Mathias Dillen, Frederik Coppens, Björn Grüning, Ignacio Eguinoa, Philip Ewels, Carole Goble
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 3, p e1009823 (2022)
Externí odkaz:
https://doaj.org/article/42e78f07c9df434d965679c8492db65e
Autor:
Dannon Baker, Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Nicholas Keener, Delphine Larivière, Andrew Lonie, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver
Publikováno v:
PLoS Pathogens, Vol 16, Iss 8, p e1008643 (2020)
The current state of much of the Wuhan pneumonia virus (severe acute respiratory syndrome coronavirus 2 [SARS-CoV-2]) research shows a regrettable lack of data sharing and considerable analytical obfuscation. This impedes global research cooperation,
Externí odkaz:
https://doaj.org/article/2709c4a4e7f0407eb700234aa5780e6e
Autor:
Subina Mehta, Caleb W. Easterly, Ray Sajulga, Robert J. Millikin, Andrea Argentini, Ignacio Eguinoa, Lennart Martens, Michael R. Shortreed, Lloyd M. Smith, Thomas McGowan, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap
Publikováno v:
Proteomes, Vol 8, Iss 3, p 15 (2020)
For mass spectrometry-based peptide and protein quantification, label-free quantification (LFQ) based on precursor mass peak (MS1) intensities is considered reliable due to its dynamic range, reproducibility, and accuracy. LFQ enables peptide-level q
Externí odkaz:
https://doaj.org/article/d11a4e727c2c41819d9f94907c6c68fe
Autor:
Ignacio Eguinoa
Presentation given as part of the 'Open and FAIR Science' session during the ELIXIR Belgium 2022 meeting on18 May 2022in Brussels, Belgium.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bb819391329af004d89bc83ffc3fac3c
Autor:
Dave Bouvier, Simon Gladman, Jennifer Hillman-Jackson, Nicola Soranzo, Peter van Heusden, Daniel Fornika, Hans-Rudolf Hotz, Jayadev Joshi, Bradley W. Langhorst, Nathan C. Sheffield, Sergey Golitsynskiy, Frederik Coppens, Gianmauro Cuccuru, David Anderson de Lima Morais, Helena Rasche, Daniel Blankenberg, Björn Grüning, Michał Stolarczyk, Ignacio Eguinoa, Alex Patak, Mauro Petrillo, Nagampalli Vijaykrishna, Michel Barrette, Matthias Bernt, Nate Coraor, Marius van den Beek, Antonio Puertas-Gallardo
Publikováno v:
BIOINFORMATICS ADVANCES
Bioinformatics Advances, 2(1):vbac030
Bioinformatics Advances, 2(1):vbac030
SummaryProperly and effectively managing reference datasets is an important task for many bioinformatics analyses. Refgenie is a reference asset management system that allows to easily organize, retrieve, and share such datasets. Here, we describe th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d96be6bb062a6f081776ffe0b52d40f7
https://pure.eur.nl/en/publications/90eddbf6-6013-459e-982a-38b7a33e1c8e
https://pure.eur.nl/en/publications/90eddbf6-6013-459e-982a-38b7a33e1c8e
Autor:
Beatriz Serrano-Solano, Anne Fouilloux, Ignacio Eguinoa, Matúš Kalaš, Björn Grüning, Frederik Coppens
Publikováno v:
Data Intelligence
Despite recent encouragement to follow the FAIR principles, the day-to-day research practices have not changed substantially. Due to new developments and the increasing pressure to apply best practices, initiatives to improve the efficiency and repro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::15134b905cde67ca7d1a2cb0ad241a82
http://hdl.handle.net/10852/99834
http://hdl.handle.net/10852/99834
Autor:
Dilmurat Yusuf, Bert Droesbeke, Flora D'Anna, Ignacio Eguinoa, Rolf Backofen, Frederik Coppens, Miguel Roncoroni, Björn Grüning, Kim De Ruyck
Publikováno v:
Bioinformatics
BIOINFORMATICS
BIOINFORMATICS
Summary Many aspects of the global response to the COVID-19 pandemic are enabled by the fast and open publication of SARS-CoV-2 genetic sequence data. The European Nucleotide Archive (ENA) is the European recommended open repository for genetic seque
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53a328c5748006db70b8891ba76924c0
https://pubmed.ncbi.nlm.nih.gov/34096994
https://pubmed.ncbi.nlm.nih.gov/34096994
Autor:
Peter Sefton, Eoghan Ó Carragáin, Stian Soiland-Reyes, Oscar Corcho, Daniel Garijo, Raul Palma, Frederik Coppens, Carole Goble, José María Fernández, Kyle Chard, Jose Manuel Gomez-Perez, Michael R Crusoe, Ignacio Eguinoa, Nick Juty, Kristi Holmes, Jason A. Clark, Salvador Capella-Gutierrez, Alasdair J. G. Gray, Stuart Owen, Alan R. Williams, Giacomo Tartari, Finn Bacall, Thomas Thelen, Hervé Ménager, Laura Rodríguez-Navas, Paul Walk, brandon whitehead, Mark Wilkinson, Paul Groth, Erich Bremer, LJ Garcia Castro, Karl Sebby, Alexander Kanitz, Ana Trisovic, Gavin Kennedy, Mark Graves, Jasper Koehorst, Simone Leo, Marc Portier
Publikováno v:
Sefton, P, Carragáin, E Ó, Soiland-Reyes, S, Corcho, O, Garijo, D, Palma, R, Coppens, F, Goble, C, Fernández, J M, Chard, K, Gomez-Perez, J M, Crusoe, M R, Eguinoa, I, Juty, N, Holmes, K, Clark, J A, Capella-Gutierrez, S, Gray, A J G, Owen, S, Williams, A R, Tartari, G, Bacall, F, Thelen, T, Ménager, H, Rodríguez-Navas, L, Walk, P, whitehead, B, Wilkinson, M, Groth, P, Bremer, E, Castro, LJ G, Sebby, K, Kanitz, A, Trisovic, A, Kennedy, G, Graves, M, Koehorst, J, Leo, S & Portier, M 2021, RO-Crate Metadata Specification 1.1.1 . researchobject.org . https://doi.org/10.5281/zenodo.4541002
Web-version: https://w3id.org/ro/crate/1.1 This document specifies a method, known as RO-Crate (Research Object Crate), of aggregating and describing research data with associated metadata. RO-Crates can aggregate and describe any resource including
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5ffb1575f1cf732d1bcd66e45c79ccd6
https://www.research.manchester.ac.uk/portal/en/publications/rocrate-metadata-specification-111(d956a303-0d1a-4519-b3f8-2e739dc96f36).html
https://www.research.manchester.ac.uk/portal/en/publications/rocrate-metadata-specification-111(d956a303-0d1a-4519-b3f8-2e739dc96f36).html
Autor:
Peter Sefton, Eoghan Ó Carragáin, Stian Soiland-Reyes, Oscar Corcho, Daniel Garijo, Raul Palma, Frederik Coppens, Carole Goble, José María Fernández, Kyle Chard, Jose Manuel Gomez-Perez, Michael R Crusoe, Ignacio Eguinoa, Nick Juty, Kristi Holmes, Jason A. Clark, Salvador Capella-Gutierrez, Alasdair J. G. Gray, Stuart Owen, Alan R. Williams, Giacomo Tartari, Finn Bacall, Thomas Thelen, Hervé Ménager, Laura Rodríguez-Navas, Paul Walk, brandon whitehead, Mark Wilkinson, Paul Groth, Erich Bremer, LJ Garcia Castro, Karl Sebby, Alexander Kanitz, Ana Trisovic, Gavin Kennedy, Mark Graves, Jasper Koehorst, Simone Leo
Publikováno v:
Sefton, P, Carragáin, E Ó, Soiland-Reyes, S, Corcho, O, Garijo, D, Palma, R, Coppens, F, Goble, C, Fernández, J M, Chard, K, Gomez-Perez, J M, Crusoe, M R, Eguinoa, I, Juty, N, Holmes, K, Clark, J A, Capella-Gutierrez, S, Gray, A J G, Owen, S, Williams, A R, Tartari, G, Bacall, F, Thelen, T, Ménager, H, Rodríguez-Navas, L, Walk, P, whitehead, B, Wilkinson, M, Groth, P, Bremer, E, Castro, LJ G, Sebby, K, Kanitz, A, Trisovic, A, Kennedy, G, Graves, M, Koehorst, J & Leo, S 2020, RO-Crate Metadata Specification 1.1 . researchobject.org . https://doi.org/10.5281/zenodo.4031327
Web-version: https://w3id.org/ro/crate/1.1 This document specifies a method, known as RO-Crate (Research Object Crate), of organizing file-based data with associated metadata, using linked data principles, in both human and machine readable formats,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d6070c71c7c86102d976575a0bb7668f