Perspectives on automated composition of workflows in the life sciences:[version 1; peer review: 2 approved]

Autor: Lamprecht, Anna-Lena, Palmblad, Magnus, Ison, Jon, Schwämmle, Veit, Manir, Mohammad Sadnan Al, Altintas, Ilkay, Amor, Ammar Ben Hadj, Capella-Gutierrez, Salvador, Charonyktakis, Paulos, Crusoe, Michael R., Gil, Yolanda, Goble, Carole, Griffin, Timothy J., Groth, Paul, Ienasescu, Hans, Jagtap, Pratik, Kalaš, Matúš, Kasalica, Vedran, Khanteymoori, Alireza, Kuhn, Tobias, Mei, Hailiang, Ménager, Hervé, Möller, Steffen, Robert, Vincent, Soiland-Reyes, Stian, Stevens, Robert, Szaniszlo, Szoke, Verberne, Suzan, Verhoeven, Aswin, Wolstencroft, Katherine

Publikováno v: Lamprecht, A-L, Palmblad, M, Ison, J, Schwämmle, V, Manir, M S A, Altintas, I, Amor, A B H, Capella-Gutierrez, S, Charonyktakis, P, Crusoe, M R, Gil, Y, Goble, C, Griffin, T J, Groth, P, Ienasescu, H, Jagtap, P, Kalaš, M, Kasalica, V, Khanteymoori, A, Kuhn, T, Mei, H, Ménager, H, Möller, S, Robert, V, Soiland-Reyes, S, Stevens, R, Szaniszlo, S, Verberne, S, Verhoeven, A & Wolstencroft, K 2021, ' Perspectives on automated composition of workflows in the life sciences : [version 1; peer review: 2 approved] ', F1000Research, vol. 10, 897 . https://doi.org/10.12688/f1000research.54159.1

Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome manual process due to a lack

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https://doi.org/10.12688/f1000research.54159.1

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Community curation of bioinformatics software and data resources

Autor: Ison, Jon, Ménager, Hervé, Brancotte, Bryan, Jaaniso, Erik, Salumets, Ahto, Raček, Tomáš, Lamprecht, Anna-Lena, Palmblad, Magnus, Kalaš, Matúš, Chmura, Piotr, Hancock, John M, Schwämmle, Veit, Ienasescu, Hans-Ioan, Sub Software Technology, Software Technology

Publikováno v: Ison, J, Ménager, H, Brancotte, B, Jaaniso, E, Salumets, A, Raček, T, Lamprecht, A L, Palmblad, M, Kalaš, M, Chmura, P, Hancock, J M, Schwämmle, V & Ienasescu, H I 2020, ' Community curation of bioinformatics software and data resources ', Briefings in Bioinformatics, vol. 21, no. 5, pp. 1697-1705 . https://doi.org/10.1093/bib/bbz075
Ison, J, Ménager, H, Brancotte, B, Jaaniso, E, Salumets, A, Raček, T, Lamprecht, A-L, Palmblad, M, Kalaš, M, Chmura, P, Hancock, J M, Schwämmle, V & Ienasescu, H-I 2020, ' Community curation of bioinformatics software and data resources ', Briefings in Bioinformatics, vol. 21, no. 5, pp. 1697-1705 . https://doi.org/10.1093/bib/bbz075
Briefings in Bioinformatics
Briefings in Bioinformatics, 21(5), 1697-1705. OXFORD UNIV PRESS
Briefings in Bioinformatics, 2019, pp.bbz075. ⟨10.1093/bib/bbz075⟩
Briefings in Bioinformatics. Oxford University Press
Ison, J, Ménager, H, Brancotte, B, Jaaniso, E, Salumets, A, Raček, T, Lamprecht, A-L, Palmblad, M, Kalaš, M, Chmura, P J, Hancock, J M, Schwämmle, V & Ioan Ienasescu, H 2020, ' Community curation of bioinformatics software and data resources ', Briefings in Bioinformatics, vol. 21, no. 5, pp. 1697–1705 . https://doi.org/10.1093/bib/bbz075
Briefings in Bioinformatics, Oxford University Press (OUP), 2019, pp.bbz075. ⟨10.1093/bib/bbz075⟩

The corpus of bioinformatics resources is huge and expanding rapidly, presenting life scientists with a growing challenge in selecting tools that fit the desired purpose. To address this, the European Infrastructure for Biological Information is supp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f7d6b320866982801403fa2ae8e2439
https://dspace.library.uu.nl/handle/1874/385733

Additional file 1: of The bio.tools registry of software tools and data resources for the life sciences

Autor: Ison, Jon, Ienasescu, Hans, Chmura, Piotr, Rydza, Emil, Ménager, Hervé, Matúš Kalaš, Schwämmle, Veit, Grüning, Björn, Beard, Niall, Lopez, Rodrigo, Duvaud, Severine, Stockinger, Heinz, Persson, Bengt, Vařeková, Radka, Tomáš Raček, Jiří Vondrášek, Peterson, Hedi, Salumets, Ahto, Jonassen, Inge, Hooft, Rob, Nyrönen, Tommi, Valencia, Alfonso, Capella, Salvador, Gelpí, Josep, Zambelli, Federico, Babis Savakis, Leskošek, Brane, Rapacki, Kristoffer, Blanchet, Christophe, Jimenez, Rafael, Oliveira, Arlindo, Vriend, Gert, Collin, Olivier, Helden, Jacques, Løngreen, Peter, Brunak, Søren

Publikováno v: Datacite

Review history. (DOCX 20 kb)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0a1054506062ae70c7caa99482bd51cc

D1.7 Description Of The Registry User Helpdesk & Impact On User Support Via Community Forums

Autor: Ison, Jon, Ienasescu, Hans, Menager, Herve, ELIXIR Tools community

The objective of EXCELERATE Deliverable 1.7 is to provide comprehensive support forusers of the ELIXIR Tools and Data Services Registry ( https://bio.tools ). The core aim isto deliver impact for end-users broadly, making it easier for them to contri

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3193642afee01a5e5c34bd3f1878aed3