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pro vyhledávání: '"Ida de Vries"'
Autor:
Ida de Vries, Danique Ammerlaan, Tatjana Heidebrecht, Patrick H. N. Celie, Daan P. Geerke, Robbie P. Joosten, Anastassis Perrakis
Base-J (β-D-Glucopyranosyloxymethyluracil) is a modified DNA nucleotide that replaces 1% of thymine in kinetoplastid flagellates. The biosynthesis and maintenance of base-J depends on the base-J Binding Protein 1 (JBP1), that has a thymidine hydroxy
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0b4785f11a61fea515b902704d2b573e
https://doi.org/10.1101/2023.01.23.525147
https://doi.org/10.1101/2023.01.23.525147
Publikováno v:
Nature Methods
Artificial intelligence-based protein structure prediction approaches have had a transformative effect on biomolecular sciences. The predicted protein models in the AlphaFold protein structure database, however, all lack coordinates for small molecul
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a595000fb281123f8c2ad4146adc8dbd
Publikováno v:
Nature methods.
Artificial intelligence-based protein structure prediction approaches have had a transformative effect on biomolecular sciences. The predicted protein models in the AlphaFold protein structure database, however, all lack coordinates for small molecul
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::606e365e8467a028c0f29ecac4b0b4ea
https://pubmed.ncbi.nlm.nih.gov/36424442
https://pubmed.ncbi.nlm.nih.gov/36424442
Autor:
Ida de Vries
Publikováno v:
Bijzijn. 6:39-39
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1de58eae15aa616b614326cc1562e286
https://doi.org/10.1007/s12415-011-0146-5
https://doi.org/10.1007/s12415-011-0146-5
Autor:
Ida de Vries, Maarten L. Hekkelman, Xiang-Jun Lu, Anastassis Perrakis, Mandar Deshpande, Tim Kwakman, Sameer Velankar, Robbie P. Joosten
Publikováno v:
Acta Crystallographica Section D Structural Biology
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology
New restraints and validation targets for Watson–Crick base pairs are implemented in PDB-REDO and are applied to nucleic acid structures in the Protein Data Bank.
The quality of macromolecular structure models crucially depends on refinement a
The quality of macromolecular structure models crucially depends on refinement a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::81c7603d5eb3a19f592db70c9e5f5a22