Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Ian M. Dew"'
Publikováno v:
Journal of Computational Biology. 12:497-513
The current generation of genome assembly programs uses distance and orientation relationships of paired end reads of clones (mate pairs) to order and orient contigs. Mate pair data can also be used to evaluate and compare assemblies after the fact.
Autor:
Mei Wang, Frank H. Collins, Yong Liang, José M. C. Ribeiro, Zhijian Tu, Jason R. Miller, Mark Yandell, Pantelis Topalis, Hongguang Shao, Qi Zhao, Hamilton O. Smith, Ali N Dana, Zhaoxi Ke, J. Craig Venter, Deborah R. Nusskern, Christos Louis, Ivica Letunic, Brian P. Walenz, Granger G. Sutton, Patrick Wincker, Anastasios C. Koutsos, Paul T. Brey, Ewan Birney, Jean Weissenbach, Fotis C. Kafatos, Cheryl A. Evans, Kerry J. Woodford, Dana Thomasova, Eugene W. Myers, Stephen L. Hoffman, Kokoza Eb, Josep F. Abril, Randall Bolanos, Megan A. Regier, Holly Baden, George K. Christophides, Véronique de Berardinis, Jingtao Sun, James R. Hogan, Kabir Chatuverdi, Ron Wides, Emmanuel Mongin, Igor F. Zhimulev, Steven L. Salzberg, Danita Baldwin, Richard J. Mural, Shiaoping C. Zhu, Anibal Cravchik, Jhy-Jhu Lin, G. Mani Subramanian, Young S. Hong, Shuang Cai, Francis Kalush, Rosane Charlab, Martin Wu, Claudia Blass, Mark Raymond Adams, Robert A. Holt, Clark M. Mobarry, Douglas B. Rusch, Michael Flanigan, Jim Biedler, Susanne L. Hladun, Ping Guan, Cynthia Sitter, Joel A. Malek, Mario Coluzzi, Cynthia Pfannkoch, Arthur L. Delcher, Alessandra della Torre, Maria F. Unger, Evgeny M. Zdobnov, Stephan Meister, Karin A. Remington, Peter W. Atkinson, Malcolm J. Gardner, Vladimir Benes, Ian M. Dew, Maria V. Sharakhova, X. Wang, Hongyu Zhang, Jian Wang, Jeffrey Hoover, Cheryl L. Kraft, Charles Roth, Andrew G. Clark, Shaying Zhao, Jyoti Shetty, Tina C. McIntosh, Aihui Wang, Zhiping Gu, Aaron L. Halpern, Anne Grundschober-Freimoser, David A. O'Brochta, Peter Arensburger, Brendan J. Loftus, Lucas Q. Ton, Véronique Anthouard, Mary Barnstead, John Lopez, Peer Bork, Didier Boscus, Michele Clamp, Jennifer R. Wortman, Claire M. Fraser, Lisa Friedli, William H. Majoros, Thomas J. Smith, Olivier Jaillon, Val Curwen, Samuel Broder, Sean D. Murphy, Roderic Guigó, Neil F. Lobo, Mathew A. Chrystal, Alison Yao, Alex Levitsky, Renee Strong, Maureen E. Hillenmeyer, Zhongwu Lai, Chinnappa D. Kodira, Rong Qi
Publikováno v:
Science, Vol. 298, No 5591 (2002) pp. 129-49
Anopheles gambiae is the principal vector of malaria, a disease that afflicts more than 500 million people and causes more than 1 million deaths each year. Tenfold shotgun sequence coverage was obtained from the PEST strain of A. gambiae and assemble
Publikováno v:
ISMB
Motivation: Current genomic sequence assemblers assume that the input data is derived from a single, homogeneous source. However, recent whole-genome shotgun sequencing projects have violated this assumption, resulting in input fragments covering the
Autor:
Ian M. Dew
Publikováno v:
Ecological Modelling. 143:59-70
Quota management systems (QMS) have become a popular method in fisheries management. Unfortunately, good data is rarely available for setting robust total allowable catch (TAC) limits. TACs are often set based on previous yields or estimates of natur
Autor:
Jason R. Miller, Liliana Florea, Granger G. Sutton, Brian P. Walenz, Russell Turner, Gennady V. Merkulov, Sorin Istrail, Alison Yao, Michael Harris, Rosane Charlab, Ian M. Dew, Clark M. Mobarry, Peter W. Li, Zuoming Deng, Valentina Di Francesco
Publikováno v:
Genome research. 15(1)
Designing effective and accurate tools for identifying the functional and structural elements in a genome remains at the frontier of genome annotation owing to incompleteness and inaccuracy of the data, limitations in the computational models, and sh
Autor:
Richard J, Mural, Mark D, Adams, Eugene W, Myers, Hamilton O, Smith, George L Gabor, Miklos, Ron, Wides, Aaron, Halpern, Peter W, Li, Granger G, Sutton, Joe, Nadeau, Steven L, Salzberg, Robert A, Holt, Chinnappa D, Kodira, Fu, Lu, Lin, Chen, Zuoming, Deng, Carlos C, Evangelista, Weiniu, Gan, Thomas J, Heiman, Jiayin, Li, Zhenya, Li, Gennady V, Merkulov, Natalia V, Milshina, Ashwinikumar K, Naik, Rong, Qi, Bixiong Chris, Shue, Aihui, Wang, Jian, Wang, Xin, Wang, Xianghe, Yan, Jane, Ye, Shibu, Yooseph, Qi, Zhao, Liansheng, Zheng, Shiaoping C, Zhu, Kendra, Biddick, Randall, Bolanos, Arthur L, Delcher, Ian M, Dew, Daniel, Fasulo, Michael J, Flanigan, Daniel H, Huson, Saul A, Kravitz, Jason R, Miller, Clark M, Mobarry, Knut, Reinert, Karin A, Remington, Qing, Zhang, Xiangqun H, Zheng, Deborah R, Nusskern, Zhongwu, Lai, Yiding, Lei, Wenyan, Zhong, Alison, Yao, Ping, Guan, Rui-Ru, Ji, Zhiping, Gu, Zhen-Yuan, Wang, Fei, Zhong, Chunlin, Xiao, Chia-Chien, Chiang, Mark, Yandell, Jennifer R, Wortman, Peter G, Amanatides, Suzanne L, Hladun, Eric C, Pratts, Jeffery E, Johnson, Kristina L, Dodson, Kerry J, Woodford, Cheryl A, Evans, Barry, Gropman, Douglas B, Rusch, Eli, Venter, Mei, Wang, Thomas J, Smith, Jarrett T, Houck, Donald E, Tompkins, Charles, Haynes, Debbie, Jacob, Soo H, Chin, David R, Allen, Carl E, Dahlke, Robert, Sanders, Kelvin, Li, Xiangjun, Liu, Alexander A, Levitsky, William H, Majoros, Quan, Chen, Ashley C, Xia, John R, Lopez, Michael T, Donnelly, Matthew H, Newman, Anna, Glodek, Cheryl L, Kraft, Marc, Nodell, Feroze, Ali, Hui-Jin, An, Danita, Baldwin-Pitts, Karen Y, Beeson, Shuang, Cai, Mark, Carnes, Amy, Carver, Parris M, Caulk, Angela, Center, Yen-Hui, Chen, Ming-Lai, Cheng, My D, Coyne, Michelle, Crowder, Steven, Danaher, Lionel B, Davenport, Raymond, Desilets, Susanne M, Dietz, Lisa, Doup, Patrick, Dullaghan, Steven, Ferriera, Carl R, Fosler, Harold C, Gire, Andres, Gluecksmann, Jeannine D, Gocayne, Jonathan, Gray, Brit, Hart, Jason, Haynes, Jeffery, Hoover, Tim, Howland, Chinyere, Ibegwam, Mena, Jalali, David, Johns, Leslie, Kline, Daniel S, Ma, Steven, MacCawley, Anand, Magoon, Felecia, Mann, David, May, Tina C, McIntosh, Somil, Mehta, Linda, Moy, Mee C, Moy, Brian J, Murphy, Sean D, Murphy, Keith A, Nelson, Zubeda, Nuri, Kimberly A, Parker, Alexandre C, Prudhomme, Vinita N, Puri, Hina, Qureshi, John C, Raley, Matthew S, Reardon, Megan A, Regier, Yu-Hui C, Rogers, Deanna L, Romblad, Jakob, Schutz, John L, Scott, Richard, Scott, Cynthia D, Sitter, Michella, Smallwood, Arlan C, Sprague, Erin, Stewart, Renee V, Strong, Ellen, Suh, Karena, Sylvester, Reginald, Thomas, Ni Ni, Tint, Christopher, Tsonis, Gary, Wang, George, Wang, Monica S, Williams, Sherita M, Williams, Sandra M, Windsor, Keriellen, Wolfe, Mitchell M, Wu, Jayshree, Zaveri, Kabir, Chaturvedi, Andrei E, Gabrielian, Zhaoxi, Ke, Jingtao, Sun, Gangadharan, Subramanian, J Craig, Venter, Cynthia M, Pfannkoch, Mary, Barnstead, Lisa D, Stephenson
Publikováno v:
Science (New York, N.Y.). 296(5573)
The high degree of similarity between the mouse and human genomes is demonstrated through analysis of the sequence of mouse chromosome 16 (Mmu 16), which was obtained as part of a whole-genome shotgun assembly of the mouse genome. The mouse genome is
Autor:
Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers, Ian M. Dew, Arthur L. Delcher, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Knut Reinert, Saul A. Kravitz, Daniel H. Huson, Karin A. Remington
Publikováno v:
ISMB (Supplement of Bioinformatics)
Two different strategies for determining the human genome are currently being pursued: one is the “clone-by-clone” approach, employed by the publicly funded project, and the other is the “whole genome shotgun assembler” approach, favored by r
Autor:
Ming Zhan, Deborah R. Nusskern, Eugene W. Myers, Xiangqun Zheng, Michael Flanigan, Randall Bolanos, Lin Chen, Ellen M. Beasley, Qing Zhang, Gerald M. Rubin, Mark Raymond Adams, Arthur L. Delcher, Clark M. Mobarry, Granger G. Sutton, Hui-Hsien Chou, Yong Liang, Dan P. Fasulo, J. Craig Venter, Rhonda C. Brandon, Eric L. Anson, Stefano Lonardi, Patrick J. Dunn, Saul A. Kravitz, Zhongwu Lai, Karin A. Remington, Catherine Jordan, Knut Reinert, Ian M. Dew, Aaron L. Halpern
Publikováno v:
Science (New York, N.Y.). 287(5461)
We report on the quality of a whole-genome assembly ofDrosophila melanogasterand the nature of the computer algorithms that accomplished it. Three independent external data sources essentially agree with and support the assembly's sequence and orderi
Publikováno v:
Journal of Computational Biology; Jun2005, Vol. 12 Issue 5, p497-513, 17p