Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Iain MacCallum"'
Autor:
Mariko Forconi, Tereza Manousaki, Peter F. Stadler, Anna Maria Fausto, Simon D. M. White, Shigehiro Kuraku, Sumir Panji, Marcia Lara, Andreas Gnirke, Hervé Philippe, Shaohua Fan, Axel Meyer, Jean Nicolas Volff, Tsutomu Miyake, Sante Gnerre, Thorsten Burmester, Anne Nitsche, Igor Schneider, John J. Stegeman, Alison P. Lee, Kerstin Lindblad-Toh, Peter van Heusden, Chris T. Amemiya, Michael S. Campbell, Ettore Olmo, Vydianathan Ravi, Jason Turner-Maier, Denis Baurain, Gary W. Litman, Federica Di Palma, Nicolas Rohner, Manfred Schartl, Giuseppe Scapigliati, Oleg Simakov, Aaron M. Berlin, Barbara Picone, Ingo Braasch, Byrappa Venkatesh, David R. Nelson, Wilfried Haerty, Diana Tabbaa, M. Gail Mueller, Francesco Buonocore, Eric S. Lander, Gianluca De Moro, Uljana Hesse, Chris P. Ponting, Nathalie Feiner, Junaid Gamieldien, Clifford J. Tabin, Gregory L. Blatch, Tatsuya Ota, Steve Hoffmann, Maria Assunta Biscotti, John H. Postlethwait, Chris L. Organ, Jessica Alföldi, Lin Fan, Mark Robinson, Stephen M. J. Searle, Louise Williams, Mark E. Hahn, Sonja J. Prohaska, Jared V. Goldstone, Dariusz Przybylski, Iain MacCallum, Rosemary A. Dorrington, Joshua Z. Levin, Tatjana Sauka-Spengler, Kenta Sumiyama, Nil Ratan Saha, Henner Brinkmann, Jeremy Johnson, John P. Cannon, Filipe J. Ribeiro, Marco Gerdol, David B. Jaffe, Adriana Canapa, Hakim Tafer, Marco Barucca, Mark Yandell, Evan Mauceli, Alan Christoffels, Sibel I. Karchner, Adrienne L. Edkins, J. Joshua Smith, Bronwen Aken, Neil H. Shubin, Ted Sharpe, Domitille Chalopin, Alberto Pallavicini
Publikováno v:
Nature
Nature, Nature Publishing Group, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
Nature 7445 (496), 311-316. (2013)
Nature, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
ResearcherID
Nature, Nature Publishing Group, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
Nature 7445 (496), 311-316. (2013)
Nature, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
ResearcherID
Acquisition and storage of Latimeria chalumnae samples was supported by grants from the African Coelacanth Ecosystem Programme of the South African National Department of Science and Technology. Generation of the Latimeria chalumnae and Protopterus a
Autor:
Iain MacCallum, Ryan Hegarty, Brian Sogoloff, Laurie Holmes, David B. Jaffe, Eric S. Lander, Shuangye Yin, Bayo Lau, Chad Nusbaum, Ted Sharpe, Diana Tabbaa, Carsten Russ, Neil I. Weisenfeld, Louise Williams
Publikováno v:
Nature genetics
PMC
PMC
Complete knowledge of the genetic variation in individual human genomes is a crucial foundation for understanding the etiology of disease. Genetic variation is typically characterized by sequencing individual genomes and comparing reads to a referenc
Autor:
Andreas Gnirke, Gad Getz, Sarah Young, Na Li, David B. Jaffe, Terrance Shea, Iain MacCallum, Louise Williams, Chad Nusbaum, Michael S. Lawrence, Aaron M. Berlin, Diana Tabbaa, Yotam Drier
Publikováno v:
Genome Research. 22:2241-2249
Eliminating the bacterial cloning step has been a major factor in the vastly improved efficiency of massively parallel sequencing approaches. However, this also has made it a technical challenge to produce the modern equivalent of the Fosmid- or BAC-
Autor:
Jonathan Butler, Matthew K. Belmonte, David B. Jaffe, Iain MacCallum, Eric S. Lander, Chad Nusbaum, Ilya Shlyakhter, Michael Kleber
Publikováno v:
Genome Research. 18:810-820
New DNA sequencing technologies deliver data at dramatically lower costs but demand new analytical methods to take full advantage of the very short reads that they produce. We provide an initial, theoretical solution to the challenge of de novo assem
Autor:
Frances Letendre, Vasilia Magnisalis, Helen Vassiliev, Rebecca Reyes, Maura Costello, St Christophe Acer, Pen MacDonald, Geneva Young, Katherine Thompson, Iain MacCallum, Tarjei S. Mikkelsen, Andy Vo, Eva Markiewicz, Yeshi Lokyitsang, Sharon Stavropoulos, Rachel Mittelman, Xiaohui Xie, Diallo Ferguson, James Cuff, Terence P. Speed, Catherine Stone, Tanya Mihova, Janine E. Deakin, Aaron M. Berlin, David A. Ray, David D. Pollock, Ben Kanga, Kunsang Gyaltsen, Scott Anderson, Gary Gearin, Nabil Hafez, Lisa Chuda, Marco A. Marra, David B. Jaffe, Leonid Boguslavskiy, Asha Kamat, Jonathan Butler, Alicia Franke, Lynne Aftuck, Sheridon Channer, Rosie Levine, Kerstin Lindblad-Toh, Birhane Hagos, Imane Bourzgui, Monika D. Huard, Tamrat Negash, Jamal Abdulkadir, Tsering Wangchuk, Georgius De Haan, Sheila Fisher, Justin Abreu, Abderrahim Farina, Kebede Maru, M. Erii Husby, Peter Kisner, Kunsang Dorjee, Jacob L. Glass, Tashi Lokyitsang, Nyima Norbu, Jennifer Baldwin, Christina R. Gearin, Otero L. Oyono, Atanas Mihalev, Yama Thoulutsang, Katie D'Aco, Choe Norbu, Christopher Strader, Edda Koina, Allen Alexander, Barry O'Neill, William Brockman, Wanjun Gu, Richard Elong, Keenan Ross, Shailendra Yadav, Alan Dupes, Seva Kashin, James Meldrim, Dmitry Khazanovich, Passang Dorje, Adal Abebe, April Cook, Matthew Breen, Randy L. Jirtle, Shangtao Liu, Jean L. Chang, Patrick Cahill, Claire M. Wade, Chee Whye Chin, Dennis C. Friedrich, Tina Goode, Cecil Rise, Robert D. Nicholls, Peter Rogov, Adam Brown, Oana Mihai, Sujaa Raghuraman, Adam Wilson, Marcia Lara, Chelsea D. Foley, Susan Faro, Sampath Settipalli, Thu Nguyen, Matthew Wakefield, Xiaohong Liu, Anna Montmayeur, Jerzy Jurka, Ngawang Sherpa, Riza M. Daza, Evan Mauceli, Senait Tesfaye, Sharleen Grewal, Susan McDonough, Leo Goodstadt, Manuel Garber, John M. Greally, Valentine Mlenga, Manfred Grabherr, Charles Matthews, Andrew Zimmer, Teena Mehta, Harindra Arachi, Mark A. Batzer, Rakela Lubonja, Margaret Priest, Diana Shih, Joseph Graham, Panayiotis V. Benos, Lance S. Davidow, Alex Lipovsky, Stephen M. J. Searle, Andreas Heger, Timothy A. Hore, Patrick Cooke, Leonidas Mulrain, Tsering Wangdi, Jennifer A. Marshall Graves, Sante Gnerre, Michelle L. Baker, Jacqueline E. Schein, Michael Weiand, Jessica Spaulding, Charlotte Henson, Jane Wilkinson, Terry Shea, Shannon E. Duke, William McCusker, Kerri Topham, Jerome Naylor, Lu Shi, Fritz Pierre, Claude Bonnet, Shaun Mahony, Michele Clamp, Katherine Belov, John L. VandeBerg, Nicole Stange-Thomann, Annie Lui, Radhika Das, Pema Phunkhang, Andrew J. Gentles, Elizabeth P. Ryan, Erica Anderson, Jill Falk, Bronwen Aken, Robert Nicol, Ted Sharpe, Sahal Osman, Missole Doricent, Michael Kleber, Jeannie T. Lee, Paul D. Waters, Melissa Fazzari, Jinlei Liu, Loryn Gadbois, Lisa Zembek, Daniel Bessette, Pasang Bachantsang, Adam Navidi, Caleb Webber, Tashi Bayul, Brikti Abera, Mayumi Oda, Gavin A. Huttley, Jennifer L. Hall, Chris P. Ponting, Michael Kamal, Kimberly Dooley, Mieke Citroen, Tsamla Tsamla, Ira Topping, Eric S. Lander, Edward Grandbois, Christopher Patti, Louis Meneus, Tracey Honan, Zuly E. Parra, Nga Nguyen, Todd Sparrow, Dawa Thoulutsang, Leanne Hughes, Yama Cheshatsang, Qing Yu, Niall J. Lennon, Nathaniel Novod, Christina Demaso, Anthony T. Papenfuss, Paul B. Samollow, Toby Bloom, Andrew Hollinger, Boris Boukhgalter, Talene Thomson, Zac Zwirko, Georgia Giannoukos, Michael C. Zody, Danni Zhong, Jason Blye, Stuart DeGray, Marc Azer, Robert D. Miller, Amr Abdouelleil, Brian Hurhula, Filip Rege, John Stalker, Andrew Barry, Pablo Alvarez, Norbu Dhargay, Krista Lance, Chris T. Amemiya, Jerilyn A. Walker, Jennifer R. Weidman, Peter An, Erin E. Dooley, William Lee, Alville Collymore
Publikováno v:
Nature. 447:167-177
We report a high-quality draft of the genome sequence of the grey, short-tailed opossum (Monodelphis domestica). As the first metatherian ('marsupial') species to be sequenced, the opossum provides a unique perspective on the organization and evoluti
Publikováno v:
Journal of Optics A: Pure and Applied Optics. 6:698-702
A procedure has been devised for measuring the angular dependence of light scattering from suspensions of phytoplankton cells at forward angles from 0.25 ◦ to 8 ◦ . The cells were illuminated with a spatially-filtered laser beam and the angular d
Autor:
Alison P. Lee, Michaelle Rakotomanga, Jeremy A. Johnson, Hidenori Nishihara, Frederick J. Tan, Jessica Alföldi, Alvin Yu Jin Ng, Naoual Azzouzi, Byrappa Venkatesh, Steve Searle, Orly Eshel, Bronwen Aken, Ted Sharpe, Thomas D. Kocher, Gideon Hulata, Filipe J. Ribeiro, Eric S. Lander, Norihiro Okada, Wilfried Haerty, Thibaut Hourlier, Natalie S. Haddad, Marcia Lara, Rosa Alcazar, Karen L. Carleton, Catherine E. Wagner, Federica Di Palma, M. Emília Santos, Masato Nikaido, Eric A. Miska, Salome Mwaiko, Axel Meyer, Frédérique Barloy-Hubler, Leslie Gaffney, Sante Gnerre, David B. Jaffe, Jason Turner-Maier, David Brawand, Oleg Simakov, Lucie Greuter, Helena D'Cotta, Milan Malinsky, Iain MacCallum, Hyun Ji Noh, Shuangye Yin, Luis Sanchez-Pulido, Jean-François Baroiller, Shaohua Fan, David J. Penman, Ryan F. Bloomquist, Ross Swofford, Matthew A. Conte, Chris P. Ponting, Chris T. Amemiya, J. Todd Streelman, Richard Guyon, Hugo F. Gante, Dariusz Przybylski, Robert M Harris, Walter Salzburger, Irene Keller, Francis Galibert, Russell D. Fernald, Aaron M. Berlin, Yang I. Li, Pamela Russell, Hans A. Hofmann, Ole Seehausen, Suzy C. P. Renn, Louise Williams, Micha Ron, Kerstin Lindblad-Toh, Zhi Wei Lim, Catherine Ozouf-Costaz, Etienne Bezault, Sarah Young
Publikováno v:
Nature, vol 513, iss 7518
Nature
Nature, Nature Publishing Group, 2014, 513 (7518), pp.375-381. ⟨10.1038/nature13726⟩
PMC
Nature, 2014, 513 (7518), pp.375-381. ⟨10.1038/nature13726⟩
Brawand, David; Wagner, Catherine; Li, Yang I.; Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y.; Lim, Zhi Wei; Bezault, Etienne; Turner-Maier, Jason; Johnson, Jeremy; Alcazar, Rosa; Noh, Hyun Ji; Russell, Pamela; Aken, Bronwen; Alföldi, Jessica; Amemiya, Chris; Azzouzi, Naoual; Baroiller, Jean-François; ... (2014). The genomic substrate for adaptive radiation in African cichlid fish. Nature, 513(7518), pp. 375-381. Macmillan Journals Ltd. 10.1038/nature13726
Nature
Nature, Nature Publishing Group, 2014, 513 (7518), pp.375-381. ⟨10.1038/nature13726⟩
PMC
Nature, 2014, 513 (7518), pp.375-381. ⟨10.1038/nature13726⟩
Brawand, David; Wagner, Catherine; Li, Yang I.; Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y.; Lim, Zhi Wei; Bezault, Etienne; Turner-Maier, Jason; Johnson, Jeremy; Alcazar, Rosa; Noh, Hyun Ji; Russell, Pamela; Aken, Bronwen; Alföldi, Jessica; Amemiya, Chris; Azzouzi, Naoual; Baroiller, Jean-François; ... (2014). The genomic substrate for adaptive radiation in African cichlid fish. Nature, 513(7518), pp. 375-381. Macmillan Journals Ltd. 10.1038/nature13726
CC-BY-NC-SA; International audience; Cichlid fishes are famous for large, diverse and replicated adaptive radiations in the Great Lakes of East Africa. To understand the molecular mechanisms underlying cichlid phenotypic diversity, we sequenced the g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::75fe19ee6d271582d43fba577bf3efe5
https://escholarship.org/uc/item/9dc9w4w1
https://escholarship.org/uc/item/9dc9w4w1
Autor:
Dent Earl, Jacob O. Kitzman, Iain MacCallum, James R. Knight, Jacques Corbeil, Elenie Godzaridis, Cristian Del Fabbro, Paul J. Kersey, Martin Hunt, Octávio S. Paulo, Joseph Fass, Isaac Ho, Michael C. Schatz, Erich D. Jarvis, Dominique Lavenier, Simone Scalabrin, Thomas D. Otto, Nicolas Maillet, Siu-Ming Yiu, Timothy I. Shaw, David B. Jaffe, Henry Song, Ruibang Luo, Steve Goldstein, David Haussler, Francisco Pina-Martins, Richard A. Gibbs, Adam M. Phillippy, Michael Bechner, Ganeshkumar Ganapathy, Stephen Richards, Riccardo Vicedomini, Shuangye Yin, François Laviolette, Yingrui Li, T. Roderick Docking, Binghang Liu, Carson Qu, Wen-Chi Chou, Hao Zhang, Nuno A. Fonseca, Dariusz Przybylski, Bruno Vieira, Yue Liu, Matthew D. MacManes, Sébastien Boisvert, Yujian Shi, Jared T. Simpson, Sergey Kazakov, Sergey Koren, Jarrod Chapman, Giles Hall, Paul Baranay, Sante Gnerre, Shiguo Zhou, Rayan Chikhi, Filipe J. Ribeiro, Jason T. Howard, Zhenyu Li, Pavel Fedotov, Jay Shendure, J. Graham Ruby, Joseph B. Hiatt, Benedict Paten, Ian F Korf, David C. Schwartz, Keith Bradnam, Jianying Yuan, Alexey Sergushichev, Jun Wang, Hamidreza Chitsaz, Daniel S. Rokhsar, Inanc Birol, Huaiyang Jiang, Kim C. Worley, Anton Alexandrov, Zemin Ning, Delphine Naquin, Michael Place, Matthias Haimel, Guojie Zhang, Guillaume Chapuis, Fedor Tsarev, Scott J. Emrich, Shaun D. Jackman, Sergey Melnikov, Xiang Qin, Ted Sharpe, Francesco Vezzi, Tak-Wah Lam, Richard Durbin
Publikováno v:
GigaScience
GigaScience, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Bradnam, Keith R; Fass, Joseph N; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, Inanç; et al.(2013). Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience, 2(1), 10. doi: http://dx.doi.org/10.1186/2047-217X-2-10. Retrieved from: http://www.escholarship.org/uc/item/96r138rs
GigaScience, BioMed Central, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Europe PubMed Central
GigaScience, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Bradnam, Keith R; Fass, Joseph N; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, Inanç; et al.(2013). Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience, 2(1), 10. doi: http://dx.doi.org/10.1186/2047-217X-2-10. Retrieved from: http://www.escholarship.org/uc/item/96r138rs
GigaScience, BioMed Central, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Europe PubMed Central
Background - The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many genome assembly tools are av
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bed770012eb3500d7b66d11edfc97ba9
http://hdl.handle.net/11390/990146
http://hdl.handle.net/11390/990146
Autor:
Iain Maccallum
Publikováno v:
Software: Practice and Experience. 26:293-307
Rounded arithmetic is the traditional way of presenting previous year accounts. The method of showing rounded sums of vectors in which the arithmetic still 'adds up' and the errors in the display of the components are bounded by twice the maximum rou
Autor:
Amr Abouelleil, David B. Jaffe, Carsten Russ, Anna Montmayeur, Iain MacCallum, Sante Gnerre, Dariusz Przybylski, Filipe J. Ribeiro, Terrance Shea, Bruce J. Walker, Shuangye Yin, Chad Nusbaum, Ted Sharpe, Sarah Young, Aaron M. Berlin
Knowing the genome as exactly as possible is of fundamental value to microbial biology. Once thought to be impossible, de novo assembly of short, massively parallel sequencing data is now common practice, with several tools now available (e.g., Chais
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b64ec5bda63c50b5fd8a34def450b588
https://europepmc.org/articles/PMC3483556/
https://europepmc.org/articles/PMC3483556/