Genome-wide binding analysis of 195 DNA binding proteins reveals "reservoir" promoters and human specific SVA-repeat family regulation.

Autor: Smallegan MJ; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Molecular and Cellular Biology, University of Colorado Boulder, Boulder, Colorado, United States of America., Shehata S; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Spradlin SF; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Swearingen A; Department of Molecular and Cellular Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Wheeler G; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Das A; Department of Molecular and Cellular Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Corbet G; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Nebenfuehr B; Department of Molecular and Cellular Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Ahrens D; Department of Molecular and Cellular Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Tauber D; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Lennon S; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Choi K; Department of Molecular and Cellular Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Huynh T; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Wieser T; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America., Schneider K; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Computer Science, University of Colorado Boulder, Boulder, Colorado, United States of America., Bradshaw M; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Biochemistry 5631 Spring 2020, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Computer Science, University of Colorado Boulder, Boulder, Colorado, United States of America., Basken J; Arpeggio Biosciences, Boulder, Colorado, United States of America., Lai M; Arpeggio Biosciences, Boulder, Colorado, United States of America., Read T; Arpeggio Biosciences, Boulder, Colorado, United States of America., Hynes-Grace M; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America., Timmons D; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America., Demasi J; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America., Rinn JL; BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Molecular and Cellular Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.

Publikováno v: PloS one [PLoS One] 2021 Jun 24; Vol. 16 (6), pp. e0237055. Date of Electronic Publication: 2021 Jun 24 (Print Publication: 2021).

Current cancer driver variant predictors learn to recognize driver genes instead of functional variants.

Autor: Raimondi, Daniele¹ (AUTHOR), Passemiers, Antoine¹ (AUTHOR), Fariselli, Piero² (AUTHOR), Moreau, Yves¹ (AUTHOR) yves.moreau@kuleuven.be

Publikováno v: BMC Biology. 1/13/2021, Vol. 19 Issue 1, p1-12. 12p.