Network integration and modelling of dynamic drug responses at multi-omics levels.

Autor: Selevsek N; Functional Genomics Center, ETH Zurich, Switzerland., Caiment F; Department of Toxicogenomics, Maastricht University, Maastricht, The Netherlands., Nudischer R; Roche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland., Gmuender H; Genedata AG, Basel, Switzerland., Agarkova I; Insphero AG, Schlieren, Switzerland., Atkinson FL; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Bachmann I; MicroDiscovery GmbH, Berlin, Germany., Baier V; Institute of Applied Microbiology, RWTH, Aachen, Germany., Barel G; Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Bauer C; MicroDiscovery GmbH, Berlin, Germany., Boerno S; Max-Planck-Institute for Molecular Genetics, Sequencing Unit, Berlin, Germany., Bosc N; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Clayton O; Roche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland., Cordes H; Institute of Applied Microbiology, RWTH, Aachen, Germany., Deeb S; Genedata AG, Basel, Switzerland., Gotta S; Genedata AG, Basel, Switzerland., Guye P; Insphero AG, Schlieren, Switzerland., Hersey A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Hunter FMI; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Kunz L; Functional Genomics Center, ETH Zurich, Switzerland., Lewalle A; Department of Biomedical Engineering, King's College London, London, UK., Lienhard M; Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Merken J; CARIM School for Cardiovascular Diseases, Maastricht University, Maastricht, The Netherlands., Minguet J; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Oliveira B; Department of Biomedical Engineering, King's College London, London, UK., Pluess C; Roche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland., Sarkans U; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Schrooders Y; Department of Toxicogenomics, Maastricht University, Maastricht, The Netherlands., Schuchhardt J; MicroDiscovery GmbH, Berlin, Germany., Smit I; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Thiel C; Institute of Applied Microbiology, RWTH, Aachen, Germany., Timmermann B; Max-Planck-Institute for Molecular Genetics, Sequencing Unit, Berlin, Germany., Verheijen M; Department of Toxicogenomics, Maastricht University, Maastricht, The Netherlands., Wittenberger T; Genedata AG, Basel, Switzerland., Wolski W; Functional Genomics Center, ETH Zurich, Switzerland., Zerck A; MicroDiscovery GmbH, Berlin, Germany., Heymans S; CARIM School for Cardiovascular Diseases, Maastricht University, Maastricht, The Netherlands., Kuepfer L; Institute of Applied Microbiology, RWTH, Aachen, Germany., Roth A; Roche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland., Schlapbach R; Functional Genomics Center, ETH Zurich, Switzerland., Niederer S; Department of Biomedical Engineering, King's College London, London, UK., Herwig R; Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany. herwig@molgen.mpg.de., Kleinjans J; Department of Toxicogenomics, Maastricht University, Maastricht, The Netherlands.

Publikováno v: Communications biology [Commun Biol] 2020 Oct 15; Vol. 3 (1), pp. 573. Date of Electronic Publication: 2020 Oct 15.

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.

Autor: Mitchell AL; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Scheremetjew M; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Denise H; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Potter S; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Tarkowska A; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Qureshi M; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Salazar GA; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Pesseat S; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Boland MA; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Hunter FMI; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Ten Hoopen P; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Alako B; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Amid C; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Wilkinson DJ; School of Mathematics & Statistics, Newcastle University, Newcastle upon Tyne NE1 7RU, UK., Curtis TP; School of Civil Engineering and Geosciences, Newcastle University, Newcastle upon Tyne NE1 7RU, UK., Cochrane G; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Finn RD; EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2018 Jan 04; Vol. 46 (D1), pp. D726-D735.