Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Autor: Bowman JL; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia. Electronic address: john.bowman@monash.edu., Kohchi T; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan. Electronic address: tkohchi@lif.kyoto-u.ac.jp., Yamato KT; Faculty of Biology-Oriented Science and Technology, Kindai University, 930 Nishimitani, Kinokawa, Wakayama 649-6493, Japan. Electronic address: kyamato@waka.kindai.ac.jp., Jenkins J; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; HudsonAlpha Institute of Biotechnology, Huntsville, AL, USA., Shu S; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Ishizaki K; Graduate School of Science, Kobe University, Kobe 657-8501, Japan., Yamaoka S; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Nishihama R; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Nakamura Y; National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan., Berger F; Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria., Adam C; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Aki SS; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan., Althoff F; Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany., Araki T; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Arteaga-Vazquez MA; Universidad Veracruzana, INBIOTECA - Instituto de Biotecnología y Ecología Aplicada, Av. de las Culturas Veracruzanas No.101, Colonia Emiliano Zapata, 91090, Xalapa, Veracruz, México., Balasubrmanian S; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia., Barry K; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Bauer D; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Boehm CR; Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom., Briginshaw L; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia., Caballero-Perez J; National Laboratory of Genomics for Biodiversity, CINVESTAV-IPN, Km 9.6 Lib. Norte Carr. Irapuato-León, 36821, Irapuato, Guanajuato, México., Catarino B; Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK., Chen F; Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA., Chiyoda S; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Chovatia M; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Davies KM; The New Zealand Institute for Plant & Food Research Limited, Private Bag 11-600, Palmerston North, New Zealand., Delmans M; Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom., Demura T; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan., Dierschke T; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia; Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany., Dolan L; Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK., Dorantes-Acosta AE; Universidad Veracruzana, INBIOTECA - Instituto de Biotecnología y Ecología Aplicada, Av. de las Culturas Veracruzanas No.101, Colonia Emiliano Zapata, 91090, Xalapa, Veracruz, México., Eklund DM; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia; Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-75236 Uppsala, Sweden., Florent SN; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia., Flores-Sandoval E; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia., Fujiyama A; National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan., Fukuzawa H; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Galik B; Bioinformatics & Scientific Computing, Vienna Biocenter Core Facilities (VBCF), Dr. Bohr-Gasse 3, 1030 Vienna, Austria., Grimanelli D; Institut de Recherche pour le Développement (IRD), UMR232, Université de Montpellier, Montpellier 34394, France., Grimwood J; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; HudsonAlpha Institute of Biotechnology, Huntsville, AL, USA., Grossniklaus U; Department of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, 8008 Zürich, Switzerland., Hamada T; Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902 Japan., Haseloff J; Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom., Hetherington AJ; Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK., Higo A; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Hirakawa Y; School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia; Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; Department of Life Science, Faculty of Science, Gakushuin University, Tokyo 171-8588, Japan., Hundley HN; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Ikeda Y; Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan., Inoue K; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Inoue SI; Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan., Ishida S; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Jia Q; Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA., Kakita M; Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan., Kanazawa T; National Institute for Basic Biology, 38 Nishigounaka, Myodaiji, Okazaki 444-8585, Japan; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan., Kawai Y; Department of Integrative Genomics, Tohoku Medical Bank Organization, Tohoku University, Aoba, Sendai 980-8573, Japan., Kawashima T; Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria; Department of Plant and Soil Sciences, University of Kentucky, 321 Plant Science Building, 1405 Veterans Dr., Lexington, KY 40546, USA., Kennedy M; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Kinose K; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Kinoshita T; Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; Department of Life Science, Faculty of Science, Gakushuin University, Tokyo 171-8588, Japan; Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan., Kohara Y; National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan., Koide E; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Komatsu K; Department of Bioproduction Technology, Junior College of Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan., Kopischke S; Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany., Kubo M; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan., Kyozuka J; Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan., Lagercrantz U; Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-75236 Uppsala, Sweden., Lin SS; Institute of Biotechnology, National Taiwan University, Taipei, Taiwan., Lindquist E; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Lipzen AM; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Lu CW; Institute of Biotechnology, National Taiwan University, Taipei, Taiwan., De Luna E; Instituto de Ecología, AC., Red de Biodiversidad y Sistemática, Xalapa, Veracruz, 91000, México., Martienssen RA; Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY, USA., Minamino N; National Institute for Basic Biology, 38 Nishigounaka, Myodaiji, Okazaki 444-8585, Japan; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan., Mizutani M; Graduate School of Agricultural Science, Kobe University, Rokkodai, Nada, Kobe 657-8501, Japan., Mizutani M; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Mochizuki N; Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan., Monte I; Department Genética Molecular de Plantas, Centro Nacional de Biotecnologia-CSIC, Universidad Autónoma de Madrid 28049 Madrid. Spain., Mosher R; The School of Plant Sciences, The University of Arizona, Tuscon, AZ, USA., Nagasaki H; National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan; Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan., Nakagami H; RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan; Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany., Naramoto S; Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan., Nishitani K; Laboratory of Plant Cell Wall Biology, Graduate School of Life Sciences, Tohoku University, Aoba, Sendai 980-8578, Japan., Ohtani M; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan., Okamoto T; Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan., Okumura M; Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan., Phillips J; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Pollak B; Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom., Reinders A; Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN, USA., Rövekamp M; Department of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, 8008 Zürich, Switzerland., Sano R; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan., Sawa S; Graduate school of Science and Technology, Kumamoto University, Kurokami 2-39-1, Kumamoto 860-8555, Japan., Schmid MW; Department of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, 8008 Zürich, Switzerland., Shirakawa M; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Solano R; Department Genética Molecular de Plantas, Centro Nacional de Biotecnologia-CSIC, Universidad Autónoma de Madrid 28049 Madrid. Spain., Spunde A; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Suetsugu N; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Sugano S; Department of Computational Biology and Medical Sciences, the University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562 Japan., Sugiyama A; Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan., Sun R; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Suzuki Y; Department of Computational Biology and Medical Sciences, the University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562 Japan., Takenaka M; Molekulare Botanik, Universität Ulm, 89069 Ulm, Germany., Takezawa D; Graduate School of Science and Engineering and Institute for Environmental Science and Technology, Saitama University, Saitama 338-8570, Japan., Tomogane H; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Tsuzuki M; Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902 Japan., Ueda T; National Institute for Basic Biology, 38 Nishigounaka, Myodaiji, Okazaki 444-8585, Japan., Umeda M; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan., Ward JM; Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN, USA., Watanabe Y; Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902 Japan., Yazaki K; Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan., Yokoyama R; Laboratory of Plant Cell Wall Biology, Graduate School of Life Sciences, Tohoku University, Aoba, Sendai 980-8578, Japan., Yoshitake Y; Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan., Yotsui I; RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan., Zachgo S; Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany., Schmutz J; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; HudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.

Publikováno v: Cell [Cell] 2017 Oct 05; Vol. 171 (2), pp. 287-304.e15.

Young inversion with multiple linked QTLs under selection in a hybrid zone.

Autor: Lee CR; Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, USA.; Institute of Ecology and Evolutionary Biology and Institute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan ROC., Wang B; Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, USA.; Department of Plant Ecology and Genetics, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden., Mojica JP; Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, USA., Mandáková T; Plant Cytogenomics Group, Central European Institute of Technology, Masaryk University, Kamenice 5, Brno CZ-62500, Czech Republic., Prasad KVSK; Department of Biology, Colorado State University, Fort Collins, Colorado 80523, USA., Goicoechea JL; Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA., Perera N; Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, USA., Hellsten U; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Hundley HN; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Johnson J; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Grimwood J; HudsonAlpha Institute for Biotechnology, Huntsville, Alabama 35806, USA., Barry K; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Fairclough S; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Jenkins JW; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Yu Y; Phyzen Genomics Institute, Phyzen Inc., Seoul 151-836, South Korea., Kudrna D; Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA., Zhang J; Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA., Talag J; Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA., Golser W; Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA., Ghattas K; Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, USA., Schranz ME; Biosystematics Group, Wageningen University and Research Center, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands., Wing R; HudsonAlpha Institute for Biotechnology, Huntsville, Alabama 35806, USA., Lysak MA; Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA., Schmutz J; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Rokhsar DS; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Mitchell-Olds T; Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, USA.

Publikováno v: Nature ecology & evolution [Nat Ecol Evol] 2017 Apr 03; Vol. 1 (5), pp. 119. Date of Electronic Publication: 2017 Apr 03.