Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014.

Autor: Lagrada ML; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Argimón S; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford OX3 7FZ, UK., Borlasa JB; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Abad JP; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Gayeta JM; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Masim ML; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Olorosa AM; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Cohen V; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford OX3 7FZ, UK., Jeffrey B; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford OX3 7FZ, UK., Abudahab K; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford OX3 7FZ, UK., Sia SB; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Hufano CM; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines., Stelling J; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA., Holden MTG; University of St Andrews School of Medicine, St Andrews KY16 9TF, UK., Aanensen DM; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford OX3 7FZ, UK., Carlos CC; Department of Health, Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa 1781, Philippines.

Publikováno v: Transactions of the Royal Society of Tropical Medicine and Hygiene [Trans R Soc Trop Med Hyg] 2022 Dec 02; Vol. 116 (12), pp. 1202-1213.

Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014.

Autor: Jamoralin MC Jr; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines., Argimón S; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom., Lagrada ML; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Villamin AS; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Masim ML; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Gayeta JM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Boehme KD; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Olorosa AM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Sia SB; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Hufano CM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Cohen V; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Hernandez LT; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Jeffrey B; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Abudahab K; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Stelling J; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Holden MTG; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Aanensenb DM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Carlosa CC; These authors contributed equally to this work.

Publikováno v: Western Pacific surveillance and response journal : WPSAR [Western Pac Surveill Response J] 2021 Feb 26; Vol. 12 (1), pp. 17-25. Date of Electronic Publication: 2021 Feb 26 (Print Publication: 2021).

Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines.

Autor: Argimón S; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Masim MAL; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Gayeta JM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Lagrada ML; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Macaranas PKV; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Cohen V; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Limas MT; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Espiritu HO; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Palarca JC; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Chilam J; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Jamoralin MC Jr; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Villamin AS; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Borlasa JB; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Olorosa AM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Hernandez LFT; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Boehme KD; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Jeffrey B; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Abudahab K; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Hufano CM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines.; St. Luke's Medical Center-Global City, Taguig, Metro Manila, The Philippines., Sia SB; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Stelling J; Brigham and Women's Hospital, Boston, MA, USA., Holden MTG; University of St Andrews School of Medicine, St Andrews, Scotland, UK., Aanensen DM; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK. david.aanensen@bdi.ox.ac.uk.; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK. david.aanensen@bdi.ox.ac.uk., Carlos CC; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines. ccarlosphl@yahoo.com.

Publikováno v: Nature communications [Nat Commun] 2020 Jun 01; Vol. 11 (1), pp. 2719. Date of Electronic Publication: 2020 Jun 01.