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A genomic timescale for placental mammal evolution

Autor: Foley, Nicole M, Mason, Victor C, Harris, Andrew J, Bredemeyer, Kevin R, Damas, Joana, Lewin, Harris A, Eizirik, Eduardo, Gatesy, John, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Springer, Mark S, Murphy, William J, Andrews, Gregory, Armstrong, Joel C, Bianchi, Matteo, Birren, Bruce W, Breit, Ana M, Christmas, Matthew J, Clawson, Hiram, Di Palma, Federica, Diekhans, Mark, Dong, Michael X, Fan, Kaili, Fanter, Cornelia, Forsberg-Nilsson, Karin, Garcia, Carlos J, Gazal, Steven, Genereux, Diane P, Goodman, Linda, Grimshaw, Jenna, Halsey, Michaela K, Hickey, Glenn, Hiller, Michael, Hindle, Allyson G, Hubley, Robert M, Hughes, Graham M, Johnson, Jeremy, Juan, David, Kaplow, Irene M, Keough, Kathleen C, Kirilenko, Bogdan, Koepfli, Klaus-Peter, Korstian, Jennifer M, Kowalczyk, Amanda, Kozyrev, Sergey V, Lawler, Alyssa J, Lawless, Colleen, Lehmann, Thomas, Levesque, Danielle L, Li, Xue, Lind, Abigail, Mackay-Smith, Ava, Marinescu, Voichita D, Marques-Bonet, Tomas, Meadows, Jennifer R S, Meyer, Wynn K, Moore, Jill E, Moreira, Lucas R, Moreno-Santillan, Diana D, Morrill, Kathleen M, Muntané, Gerard, Navarro, Arcadi, Nweeia, Martin, Ortmann, Sylvia, Osmanski, Austin, Paten, Benedict, Paulat, Nicole S, Pfenning, Andreas R, Phan, BaDoi N, Pollard, Katherine S, Pratt, Henry E, Ray, David A, Reilly, Steven K, Rosen, Jeb R, Ruf, Irina, Ryan, Louise, Ryder, Oliver A, Sabeti, Pardis C, Schäffer, Daniel E, Serres, Aitor, Shapiro, Beth, Smit, Arian F A, Springer, Mark, Srinivasan, Chaitanya, Steiner, Cynthia, Storer, Jessica M, Sullivan, Kevin A M, Sullivan, Patrick F, Sundström, Elisabeth, Supple, Megan A, Swofford, Ross, Talbot, Joy-El, Teeling, Emma, Turner-Maier, Jason, Valenzuela, Alejandro, Wagner, Franziska, Wallerman, Ola, Wang, Chao, Wang, Juehan, Weng, Zhiping, Wilder, Aryn P, Wirthlin, Morgan E, Xue, James R, Zhang, Xiaomeng

The precise pattern and timing of speciation events that gave rise to all living placental mammals remain controversial. We provide a comprehensive phylogenetic analysis of genetic variation across an alignment of 241 placental mammal genome assembli

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::84e495019d7602fc7ea6a7a0783dd61d

Evolutionary algorithms for the selection of single nucleotide polymorphisms.

Autor: Hubley, Robert M.¹ rhubley@systemsbiology.org, Zitzler, Eckart² zitzler@tik.ee.ethz.ch, Roach, Jared C.¹ jroach@systemsbiology.org

Publikováno v: BMC Bioinformatics. 2003, Vol. 4, p30-16. 16p. 4 Diagrams, 3 Graphs.

Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements.

Autor: Wirthlin ME; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Schmid TA; Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94708, USA., Elie JE; Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94708, USA.; Department of Bioengineering, University of California, Berkeley, Berkeley, CA 94708, USA., Zhang X; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Kowalczyk A; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Redlich R; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Shvareva VA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94708, USA., Rakuljic A; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94708, USA., Ji MB; Department of Psychology, University of California, Berkeley, Berkeley, CA 94708, USA., Bhat NS; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94708, USA., Kaplow IM; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA., Schäffer DE; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Lawler AJ; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Wang AZ; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Phan BN; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Annaldasula S; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Brown AR; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Lu T; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Lim BK; Neurobiology section, Division of Biological Science, University of California, San Diego, La Jolla, CA 92093, USA., Azim E; Molecular Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Clark NL; Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15213, USA., Meyer WK; Department of Biological Sciences, Lehigh University, Bethlehem, PA 18015, USA., Pond SLK; Department of Biology, Temple University, Philadelphia, PA 19122, USA., Chikina M; Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA., Yartsev MM; Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94708, USA.; Department of Bioengineering, University of California, Berkeley, Berkeley, CA 94708, USA., Pfenning AR; Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Andrews G, Armstrong JC, Bianchi M, Birren BW, Bredemeyer KR, Breit AM, Christmas MJ, Clawson H, Damas J, Di Palma F, Diekhans M, Dong MX, Eizirik E, Fan K, Fanter C, Foley NM, Forsberg-Nilsson K, Garcia CJ, Gatesy J, Gazal S, Genereux DP, Goodman L, Grimshaw J, Halsey MK, Harris AJ, Hickey G, Hiller M, Hindle AG, Hubley RM, Hughes GM, Johnson J, Juan D, Kaplow IM, Karlsson EK, Keough KC, Kirilenko B, Koepfli KP, Korstian JM, Kowalczyk A, Kozyrev SV, Lawler AJ, Lawless C, Lehmann T, Levesque DL, Lewin HA, Li X, Lind A, Lindblad-Toh K, Mackay-Smith A, Marinescu VD, Marques-Bonet T, Mason VC, Meadows JRS, Meyer WK, Moore JE, Moreira LR, Moreno-Santillan DD, Morrill KM, Muntané G, Murphy WJ, Navarro A, Nweeia M, Ortmann S, Osmanski A, Paten B, Paulat NS, Pfenning AR, Phan BN, Pollard KS, Pratt HE, Ray DA, Reilly SK, Rosen JR, Ruf I, Ryan L, Ryder OA, Sabeti PC, Schäffer DE, Serres A, Shapiro B, Smit AFA, Springer M, Srinivasan C, Steiner C, Storer JM, Sullivan KAM, Sullivan PF, Sundström E, Supple MA, Swofford R, Talbot JE, Teeling E, Turner-Maier J, Valenzuela A, Wagner F, Wallerman O, Wang C, Wang J, Weng Z, Wilder AP, Wirthlin ME, Xue JR, Zhang X

Publikováno v: Science (New York, N.Y.) [Science] 2024 Mar 29; Vol. 383 (6690), pp. eabn3263. Date of Electronic Publication: 2024 Mar 29.