The Gene Ontology resource: enriching a GOld mine

Autor: Carbon, S, Douglass, E, Good, Bm, Unni, Dr, Harris, Nl, Mungall, Cj, Basu, S, Chisholm, Rl, Dodson, Rj, Hartline, E, Fey, P, Thomas, Pd, Albou, Lp, Ebert, D, Kesling, Mj, Mi, Hy, Muruganujan, A, Huang, Xs, Mushayahama, T, Labonte, Sa, Siegele, Da, Antonazzo, G, Attrill, H, Brown, Nh, Garapati, P, Marygold, Sj, Trovisco, V, Dos Santos, G, Falls, K, Tabone, C, Zhou, Pl, Goodman, Jl, Strelets, Vb, Thurmond, J, Garmiri, P, Ishtiaq, R, Rodriguez-Lopez, M, Acencio, Ml, Kuiper, M, Laegreid, A, Logie, C, Lovering, Rc, Kramarz, B, Saverimuttu, Scc, Pinheiro, Sm, Gunn, H, Su, Rz, Thurlow, Ke, Chibucos, M, Giglio, M, Nadendla, S, Munro, J, Jackson, R, Duesbury, Mj, Del-Toro, N, Meldal, Bhm, Paneerselvam, K, Perfetto, L, Porras, P, Orchard, S, Shrivastava, A, Chang, Hy, Finn, Rd, Mitchell, Al, Rawlings, Nd, Richardson, L, Sangrador-Vegas, A, Blake, Ja, Christie, Kr, Dolan, Me, Drabkin, Hj, Hill, Dp, Ni, L, Sitnikov, Dm, Harris, Ma, Oliver, Sg, Rutherford, K, Wood, V, Hayles, J, Bahler, J, Bolton, Er, De Pons JL, Dwinell, Mr, Hayman, Gt, Kaldunski, Ml, Kwitek, Ae, Laulederkind, Sjf, Plasterer, C, Tutaj, Ma, Vedi, M, Wang, Sj, D'Eustachio, P, Matthews, L, Balhoff, Jp, Aleksander, Sa, Alexander, Mj, Cherry, Jm, Engel, Sr, Gondwe, F, Karra, K, Miyasato, Sr, Nash, Rs, Simison, M, Skrzypek, Ms, Weng, S, Wong, Ed, Feuermann, M, Gaudet, P, Morgat, A, Bakker, E, Berardini, Tz, Reiser, L, Subramaniam, S, Huala, E, Arighi, Cn, Auchincloss, A, Axelsen, K, Argoud-Puy, G, Bateman, A, Blatter, Mc, Boutet, E, Bowler, E, Breuza, L, Bridge, A, Britto, R, Bye-A-Jee, H, Casas, Cc, Coudert, E, Denny, P, Estreicher, A, Famiglietti, Ml, Georghiou, G, Gos, A, Gruaz-Gumowski, N, Hatton-Ellis, E, Hulo, C, Ignatchenko, A, Jungo, F, Laiho, K, Le Mercier, P, Lieberherr, D, Lock, A, Lussi, Y, Macdougall, A, Magrane, M, Martin, Mj, Masson, P, Natale, Da, Hyka-Nouspikel, N, Pedruzzi, I, Pourcel, L, Poux, S, Pundir, S, Rivoire, C, Speretta, E, Sundaram, S, Tyagi, N, Warner, K, Zaru, R, Wu, Ch, Diehl, Ad, Chan, Jn, Grove, C, Lee, Ryn, Muller, Hm, Raciti, D, Van Auken, K, Sternberg, Pw, Berriman, M, Paulini, M, Howe, K, Gao, S, Wright, A, Stein, L, Howe, Dg, Toro, S, Westerfield, M, Jaiswal, P, Cooper, L, Elser, J

Publikováno v: Nucleic Acids Research, 49, D325-D334
Nucleic Acids Research, 49, D1, pp. D325-D334
Nucleic Acids Research
Nucleic Acids Research (NAR)

The Gene Ontology Consortium (GOC) provides the most comprehensive resource currently available for computable knowledge regarding the functions of genes and gene products. Here, we report the advances of the consortium over the past two years. The n

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ed26125ffaef9c6a67144367d5cebfea
https://hdl.handle.net/11573/1660163

Current status of the multinational Arabidopsis community

Autor: Parry, Geraint, Provart, Nicholas J., Brady, Siobhan M., Uzilday, Baris, Adams, K., Araújo, W., Aubourg, S., Baginsky, S., Bakker, E., Bärenfaller, K., Batley, J., Beale, M., Beilstein, M., Belkhadir, Y., Berardini, T., Bergelson, J., Blanco-Herrera, F., Brady, S., Braun, Hans-Peter, Briggs, S., Brownfield, L., Cardarelli, M., Castellanos-Uribe, M., Coruzzi, G., Dassanayake, M., Jaeger, G.D., Dilkes, B., Doherty, C., Ecker, J., Edger, P., Edwards, D., Kasmi, F.E., Eriksson, M., Exposito-Alonso, M., Falter-Braun, P., Fernie, A., Ferro, M., Fiehn, O., Friesner, J., Greenham, K., Guo, Y., Hamann, T., Hancock, A., Hauser, M.-T., Heazlewood, J., Ho, C.-H., Hõrak, H., Huala, E., Hwang, I., Iuchi, S., Jaiswal, P., Jakobson, L., Jiang, Y., Jiao, Y., Jones, A., Kadota, Y., Khurana, J., Kliebenstein, D., Knee, E., Kobayashi, M., Koch, M., Krouk, G., Larson, T., Last, R., Lepiniec, L., Li, S., Lurin, C., Lysak, M., Maere, S., Malinowski, R., Maumus, F., May, S., Mayer, K., Mendoza-Cozatl, D., Mendoza-Poudereux, I., Meyers, B., Micol, J.L., Millar, H., Mock, H.-P., Mukhtar, K., Mukhtar, S., Murcha, M., Nakagami, H., Nakamura, Y., Nicolov, L., Nikolau, B., Nowack, M., Nunes-Nesi, A., Palmgren, M., Parry, G., Patron, N., Peck, S., Pedmale, U., Perrot-Rechenmann, C., Pieruschka, R., Pío-Beltrán, J., Pires, J.C., Provart, N., Rajjou, L., Reiser, L., Reumann, S., Rhee, S., Rigas, S., Rolland, N., Romanowski, A., Santoni, V., Savaldi-Goldstein, S., Schmitz, R., Schulze, W., Seki, M., Shimizu, K.K., Slotkin, K., Small, I., Somers, D., Sozzani, R., Spillane, C., Srinivasan, R., Taylor, N., Tello-Ruiz, M.-K., Thelen, J., Tohge, T., Town, C., Toyoda, T., Uzilday, B., Peer, Y.V.D., Wijk, K., Gillhaussen, P.V., Walley, J., Ware, D., Weckwerth, W., Whitelegge, J., Wienkoop, S., Wright, C., Wrzaczek, M., Yamazaki, M., Yanovsky, M., Žárský, V., Zhong, X.

Publikováno v: PLANT DIRECT
Plant Direct 4 (2020). doi:10.1002/pld3.248
info:cnr-pdr/source/autori:Parry G.; Provart N.J.; Brady S.M.; Uzilday B.; Adams K.; Araujo W.; Aubourg S.; Baginsky S.; Bakker E.; Barenfaller K.; Batley J.; Beale M.; Beilstein M.; Belkhadir Y.; Mendel G.; Berardini T.; Bergelson J.; Blanco-Herrera F.; Brady S.; Braun H.-P.; Briggs S.; Brownfield L.; Cardarelli M.; Castellanos-Uribe M.; Coruzzi G.; Dassanayake M.; De Jaeger G.; Dilkes B.; Doherty C.; Ecker J.; Edger P.; Edwards D.; El Kasmi F.; Eriksson M.; Exposito-Alonso M.; Falter-Braun P.; Fernie A.; Ferro M.; Fiehn O.; Friesner J.; Greenham K.; Guo Y.; Hamann T.; Hancock A.; Hauser M.-T.; Heazlewood J.; Ho C.-H.; Horak H.; Huala E.; Hwang I.; Iuchi S.; Jaiswal P.; Jakobson L.; Jiang Y.; Jiao Y.; Jones A.; Kadota Y.; Khurana J.; Kliebenstein D.; Knee E.; Kobayashi M.; Koch M.; Krouk G.; Larson T.; Last R.; Lepiniec L.; Li S.; Lurin C.; Lysak M.; Maere S.; Malinowski R.; Maumus F.; May S.; Mayer K.; Mendoza-Cozatl D.; Mendoza-Poudereux I.; Luis Micol J.; Millar H.; Mock H.-P.; Mukhtar K.; Mukhtar S.; Murcha M.; Nakagami H.; Nakamura Y.; Nicolov L.; Nikolau B.; Nowack M.; Nunes-Nesi A.; Palmgren M.; Parry G.; Patron N.; Peck S.; Pedmale U.; Perrot-Rechenmann C.; Pieruschka R.; Pio-Beltran J.; Pires J.C.; Provart N.; Rajjou L.; Reiser L.; Rhee S.; Rigas S.; Rolland N.; Romanowski A.; Savaldi-Goldstein S.; Schmitz R.; Schulze W.; Seki M.; Shimizu K.K.; Slotkin K.; Small I.; Somers D.; Sozzani R.; Spillane C.; Srinivasan R.; Taylor N.; Tello-Ruiz M.-K.; Thelen J.; Tohge T.; Town C.; Toyoda T.; Uzilday B.; Walley J.; Ware D.; Weckwerth W.; Whitelegge J.; Wienkoop S.; Wright C.; Wrzaczek M.; Yamazaki M.; Yanovsky M.; Zarsky V.; Zhong X.; Van De Peer Y.; Van Wijk K.; Von Gillhaussen P./titolo:Current status of the multinational Arabidopsis community/doi:10.1002%2Fpld3.248/rivista:Plant Direct/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume:4
Plant direct, vol 4, iss 7
Plant Direct
Plant Direct, 2020, 4 (7), ⟨10.1002/pld3.248⟩
Plant Direct, 2020, 4 (7), pp.e00248. ⟨10.1002/pld3.248⟩
Plant direct 4(7), e00248 (2020). doi:10.1002/pld3.248
Plant Direct 4:e00248 (2020)
Plant Direct, 4(7). John Wiley and Sons Inc.
Parry, G, Provart, N J, Brady, S, Uzilday, B, Adams, K, Araújo, W, Aubourg, S, Baginsky, S, Bakker, E, Bärenfaller, K, Batley, J, Beale, M, Beilstein, M, Belkhadir, Y, Mendel, G, Berardini, T, Bergelson, J, Blanco-Herrera, F, Brady, S, Braun, H P, Briggs, S, Brownfield, L, Cardarelli, M, Castellanos-Uribe, M, Coruzzi, G, Dassanayake, M, De Jaeger, G, Dilkes, B, Doherty, C, Ecker, J, Edger, P, Edwards, D, El Kasmi, F, Eriksson, M, Exposito-Alonso, M, Falter-Braun, P, Fernie, A, Ferro, M, Fiehn, O, Friesner, J, Greenham, K, Guo, Y, Hamann, T, Hancock, A, Hauser, M T, Heazlewood, J, Ho, C H, Kliebenstein, D, Li, S, Palmgren, M & The Multinational Arabidopsis Steering Committee 2020, ' Current status of the multinational Arabidopsis community ', Plant Direct, vol. 4, no. 7, e00248 . https://doi.org/10.1002/pld3.248
Plant Direct 4 (2020), Nr. 7
Parry, G, Provart, N, Brady, S, Uzilday, B, Romanowski, A & Steering Committee, T M A 2020, ' Current status of the multinational Arabidopsis community ', Plant Direct, vol. 4, no. 7, e00248, pp. 1-9 . https://doi.org/10.1002/pld3.248
Plant Direct, Vol 4, Iss 7, Pp n/a-n/a (2020)

The multinational Arabidopsis research community is highly collaborative and over the past thirty years these activities have been documented by the Multinational Arabidopsis Steering Committee (MASC). Here, we (a) highlight recent research advances

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::444e6d8214f076c2cba179464ddb4fa1
https://biblio.ugent.be/publication/8672871

RNAcentral: a comprehensive database of non-coding RNA sequences

Autor: Petrov, AI, Kay, SJE, Kalvari, I, Howe, KL, Gray, KA, Bruford, EA, Kersey, PJ, Cochrane, G, Finn, RD, Bateman, A, Kozomara, A, Griffiths-Jones, S, Frankish, A, Zwieb, CW, Lau, BY, Williams, KP, Chan, PP, Lowe, TM, Cannone, JJ, Gutell, RR, Machnicka, MA, Bujnicki, JM, Yoshihama, M, Kenmochi, N, Chai, B, Cole, JR, Szymanski, M, Karlowski, WM, Wood, V, Huala, E, Berardini, TZ, Zhao, Y, Chen, R, Zhu, W, Paraskevopoulou, MD, Vlachos, IS, Hatzigeorgiou, AG, Ma, L, Zhang, Z, Puetz, J, Stadler, PF, McDonald, D, Basu, S, Fey, P, Engel, SR, Cherry, JM, Volders, PJ, Mestdagh, P, Wower, J, Clark, M, Quek, XC, Dinger, ME

Publikováno v: Europe PubMed Central
Nucleic Acids Research
Petrov, A I, Kay, S J E, Kalvari, I, Howe, K L, Gray, K A, Bruford, E A, Kersey, P J, Cochrane, G, Finn, R D, Bateman, A, Kozomara, A, Griffiths-Jones, S, Frankish, A, Zwieb, C W, Lau, B Y, Williams, K P, Chan, P P, Lowe, T M, Cannone, J J, Gutell, R R, Machnicka, M A, Bujnicki, J M, Yoshihama, M, Kenmochi, N, Chai, B, Cole, J R, Szymanski, M, Karlowski, W M, Wood, V, Huala, E, Berardini, T Z, Zhao, Y, Chen, R, Zhu, W, Paraskevopoulou, M D, Vlachos, I S, Hatzigeorgiou, A G, Ma, L, Zhang, Z, Puetz, J, Stadler, P F, McDonald, D, Basu, S, Fey, P, Engel, S R, Cherry, J M, Volders, P J, Mestdagh, P, Wower, J, Clark, M & The RNAcentral Consortium 2017, ' RNAcentral : A comprehensive database of non-coding RNA sequences ', Nucleic acids research, vol. 45, no. D1, pp. D128-D134 . https://doi.org/10.1093/nar/gkw1008
NUCLEIC ACIDS RESEARCH

RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9f197368110d68e495c305190cb9fa87
https://www.repository.cam.ac.uk/handle/1810/265794

The Gene Ontology in 2010: extensions and refinements

Autor: Berardini, Tz, Li, D, Huala, E, Bridges, S, Burgess, S, Mccarthy, F, Carbon, S, Lewis, Se, Mungall, Cj, Abdulla, A, Wood, V, Feltrin, E, Valle, Giorgio, Chisholm, Rl, Fey, P, Gaudet, P, Kibbe, W, Basu, S, Bushmanova, Y, Eilbeck, K, Siegele, Da, Mcintosh, B, Renfro, D, Zweifel, A, Hu, Jc, Ashburner, M, Tweedie, S, ALAM FARUQUE, Y, Apweiler, R, Auchinchloss, A, Bairoch, A, Barrell, D, Binns, D, Blatter, Mc, Bougueleret, L, Boutet, E, Breuza, L, Bridge, A, Browne, P, Chan, Wm, Coudert, E, Daugherty, L, Dimmer, E, Eberhardt, R, Estreicher, A, Famiglietti, L, FERRO ROJAS, S, Feuermann, M, Foulger, R, GRUAZ GUMOWSKI, N, Hinz, U, Huntley, R, Jimenez, S, Jungo, F, Keller, G, Laiho, K, Legge, D, Lemercier, P, Lieberherr, D, Magrane, M, O'Donovan, C, Pedruzzi, I, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stanley, E, Stutz, A, Sundaram, S, Tognolli, M, Xenarios, I, Harris, Ma, Deegan, Ji, Ireland, A, Lomax, J, Jaiswal, P, Chibucos, M, Giglio, Mg, Wortman, J, Hannick, L, Madupu, R, Botstein, D, Dolinski, K, Livstone, Ms, Oughtred, R, Blake, Ja, Bult, C, Diehl, Ad, Dolan, M, Drabkin, H, Eppig, Jt, Hill, Dp, Ni, L, Ringwald, M, Sitnikov, D, Collmer, C, TORTO ALALIBO, T, Laulederkind, S, Shimoyama, M, Twigger, S, D'Eustachio, P, Matthews, L, Balakrishnan, R, Binkley, G, Cherry, Jm, Christie, Kr, Costanzo, Mc, Engel, Sr, Fisk, Dg, Hirschman, Je, Hitz, Bc, Hong, El, Krieger, Cj, Miyasato, Sr, Nash, Rs, Park, J, Skrzypek, Ms, Weng, S, Wong, Ed, Aslett, M, Chan, J, Kishore, R, Sternberg, P, VAN AUKE, K, Khodiyar, Vk, Lovering, Rc, Talmud, Pj, Howe, D, Westerfield, M.

Publikováno v: Nucleic Acids Research, vol. 38, no. Database issue, pp. D331-D335
Nucleic Acids Research

The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2e4f228dee6f491f716236b54d7dbb31
https://serval.unil.ch/resource/serval:BIB_C3C5174BCA6C.P001/REF.pdf

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