Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Hoyt Sj"'
Autor:
Adam M. Phillippy, Wojciech Makalowski, Travis J. Wheeler, Leighton J. Core, P. G. S. Grady, Rachel J. O’Neill, Daniel Olson, Michael C. Schatz, Ariel Gershman, Charles Limouse, Mitchell R. Vollger, Hoyt Sj, Jeb Rosen, Jessica M. Storer, Aaron F. Straight, Luke A Wojenski, Karen H. Miga, Reza Halabian, Arian F.A. Smit, Evan E. Eichler, Nicolas Altemose, M. Rodriguez, Jennifer L. Gerton, L. G. de Lima, Gabrielle A. Hartley, Winston Timp
Mobile elements and highly repetitive genomic regions are potent sources of lineage-specific genomic innovation and fingerprint individual genomes. Comprehensive analyses of large, composite or arrayed repeat elements and those found in more complex
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ca4d96b2c4cab32b6d89845f834609a7
https://doi.org/10.1101/2021.07.12.451456
https://doi.org/10.1101/2021.07.12.451456
Autor:
Michael E.G. Sauria, Ariel Gershman, Mitchell R. Vollger, Hoyt Sj, Michael C. Schatz, Caldas Gv, Rachel J. O’Neill, Winston Timp, Karen H. Miga, Glennis A. Logsdon, Sergey Koren, Roham Razaghi, Evan E. Eichler, Nicolas Altemose, Paul W. Hook, Arang Rhie, Adam M. Phillippy
The completion of the first telomere-to-telomere human genome, T2T-CHM13, enables exploration of the full epigenome, removing limitations previously imposed by the missing reference sequence. Existing epigenetic studies omit unassembled and unmappabl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::52afdeac4b592883f41ab5293c7822b1
https://doi.org/10.1101/2021.05.26.443420
https://doi.org/10.1101/2021.05.26.443420
Autor:
Chabot BJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Sun R; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Amjad A; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Hoyt SJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Ouyang L; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Courret C; Department of Biology, University of Rochester, Rochester, NY, USA., Drennan R; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Leo L; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Department of Biology and Biotechnology, Sapienza University of Rome, 00185, Rome, Italy.; Present Address: RNA Editing Lab, Onco-Haematology Department, Genetics and Epigenetics of Pediatric Cancers, Bambino Gesù Children Hospital, IRCCS, 00146, Rome, Italy., Larracuente AM; Department of Biology, University of Rochester, Rochester, NY, USA., Core LJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., O'Neill RJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Genetics and Genome Sciences, UConn Health, Farmington, CT, USA., Mellone BG; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA. Barbara.Mellone@uconn.edu.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA. Barbara.Mellone@uconn.edu.
Publikováno v:
Genome biology [Genome Biol] 2024 Nov 18; Vol. 25 (1), pp. 295. Date of Electronic Publication: 2024 Nov 18.
Autor:
Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Okhovat M; Department of Medicine, Knight Cardiovascular Institute, Oregon Health and Science University, Portland, OR, USA., Hoyt SJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Fuller E; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Pauloski N; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Alexandre N; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, USA., Alexandrov I; Department of Anatomy and Anthropology and Department of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Israel., Drennan R; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Dubocanin D; Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA., Gilbert DM; San Diego Biomedical Research Institute, San Diego, CA 92121, USA., Mao Y; Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA., McCann C; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Neph S; Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA., Ryabov F; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.; Department of Biomolecular Engineering, University of California Santa Cruz, CA, USA., Sasaki T; San Diego Biomedical Research Institute, San Diego, CA 92121, USA., Storer JM; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Svendsen D; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Troy W; FormBio, Dallas, TX, USA., Wells J; Department of Medicine, Knight Cardiovascular Institute, Oregon Health and Science University, Portland, OR, USA., Core L; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Stergachis A; Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA., Carbone L; Department of Medicine, Knight Cardiovascular Institute, Oregon Health and Science University, Portland, OR, USA.; Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA.; Department of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland, OR, USA.; Division of Genetics, Oregon National Primate Research Center, Portland, OR, USA., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Department of Genetics and Genome Sciences, UConn Health, Farmington, CT, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Aug 30. Date of Electronic Publication: 2024 Aug 30.
Autor:
Kalbfleisch TS; Department of Veterinary Science, University of Kentucky, Lexington, KY, USA., McKay SD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Murdoch BM; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Adelson DL; School of Biological Sciences, the University of Adelaide, North Terrace, Adelaide, South Australia, Australia., Almansa-Villa D; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Becker G; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Beckett LM; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Benítez-Galeano MJ; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Biase F; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Casey T; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Chuong E; BioFrontiers Institute, Department of Molecular Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA., Clark E; The Roslin Institute, University of Edinburgh, Edinburgh, UK., Clarke S; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Cockett N; Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT, USA., Couldrey C; Livestock Improvement Corporation, Hamilton, New Zealand., Davis BW; Department of Veterinary Pathobiology, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Elsik CG; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Faraut T; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Gao Y; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Genet C; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Grady P; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Green J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Green R; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Guan D; Department of Animal Science, University of California, Davis, Davis, CA, USA., Hagen D; Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK, USA., Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Heaton M; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA., Hoyt SJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Huang W; Department of Animal Science, Michigan State University, East Lansing, MI, USA., Jarvis E; Vertebrate Genome Laboratory, the Rockefeller University, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Kalleberg J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Khatib H; Department of Animal and Dairy Sciences, the University of Wisconsin-Madison, Madison, WI, USA., Koepfi KP; Smithsonian-Mason School of Conservation, George Mason University, Front Royal, VA, USA.; Center for Species Survival, Smithsonian's National Zoo and Conservation Biology Institute, Front Royal, VA, USA., Koltes J; Department of Animal Science, Iowa State University, Ames, IA, USA., Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Kuehn C; Friedrich-Loeffler-Institute (German Federal Research Institute for Animal Health), Greifswald-Insel Riems, Germany., Leeb T; Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Leonard A; Animal Genomics, ETH Zürich, Zurich, Switzerland., Liu GE; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Low WY; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., McConnell H; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., McRae K; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Miga K; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.; Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA, USA., Mousel M; Animal Disease Research Unit, USDA ARS, Pullman, WA, USA.; School for Global Animal Health, Washington State University, Pullman, WA, USA., Neibergs H; Department of Animal Science, Washington State University, Pullman, WA, USA., Olagunju T; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Pennell M; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Petry B; Department of Animal Science, Iowa State University, Ames, IA, USA., Pewsner M; Institute of Fish and Wildlife Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pickett BD; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pineda P; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA., Rachagani S; Veterinary Medicine and Surgery, NextGen Precision Health Institute, University of Missouri, Columbia, MO, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rijnkels M; Department of Veterinary Integrative Biosciences, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Robic A; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Rodriguez Osorio N; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Safonova Y; Computer Science and Engineering Department, Huck Institutes of the Life Sciences, Pennsylvania State University, State College, PA, USA., Schettini G; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Schnabel RD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Sirpu Natesh N; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO, USA., Stegemiller M; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Storer J; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Stothard P; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada., Stull C; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Tosser-Klopp G; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Traglia GM; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Tuggle CK; Department of Animal Science, Iowa State University, Ames, IA, USA., Van Tassell CP; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Watson C; Department of Biochemistry and Molecular Genetics, University of Louisville, Louisville, KY, USA., Weikard R; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Wimmers K; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Xie S; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Yang L; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Smith TPL; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA. tim.smith2@usda.gov., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu., Rosen BD; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA. ben.rosen@usda.gov.
Publikováno v:
Nature genetics [Nat Genet] 2024 Aug; Vol. 56 (8), pp. 1566-1573. Date of Electronic Publication: 2024 Aug 05.
Autor:
Makova KD; Penn State University, University Park, PA, USA. kdm16@psu.edu., Pickett BD; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Harris RS; Penn State University, University Park, PA, USA., Hartley GA; University of Connecticut, Storrs, CT, USA., Cechova M; University of California Santa Cruz, Santa Cruz, CA, USA., Pal K; Penn State University, University Park, PA, USA., Nurk S; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Yoo D; University of Washington School of Medicine, Seattle, WA, USA., Li Q; Johns Hopkins University, Baltimore, MD, USA., Hebbar P; University of California Santa Cruz, Santa Cruz, CA, USA., McGrath BC; Penn State University, University Park, PA, USA., Antonacci F; Università degli Studi di Bari Aldo Moro, Bari, Italy., Aubel M; University of Münster, Münster, Germany., Biddanda A; Johns Hopkins University, Baltimore, MD, USA., Borchers M; Stowers Institute, Kansas City, MO, USA., Bornberg-Bauer E; University of Münster, Münster, Germany.; MPI for Developmental Biology, Tübingen, Germany., Bouffard GG; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Brooks SY; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Carbone L; Oregon Health and Science University, Portland, OR, USA.; Oregon National Primate Research Center, Hillsboro, OR, USA., Carrel L; Penn State University School of Medicine, Hershey, PA, USA., Carroll A; Google, Mountain View, CA, USA., Chang PC; Google, Mountain View, CA, USA., Chin CS; Foundation of Biological Data Sciences, Belmont, CA, USA., Cook DE; Google, Mountain View, CA, USA., Craig SJC; Penn State University, University Park, PA, USA., de Gennaro L; Università degli Studi di Bari Aldo Moro, Bari, Italy., Diekhans M; University of California Santa Cruz, Santa Cruz, CA, USA., Dutra A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Garcia GH; University of Washington School of Medicine, Seattle, WA, USA., Grady PGS; University of Connecticut, Storrs, CT, USA., Green RE; University of California Santa Cruz, Santa Cruz, CA, USA., Haddad D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Hallast P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Harvey WT; University of Washington School of Medicine, Seattle, WA, USA., Hickey G; University of California Santa Cruz, Santa Cruz, CA, USA., Hillis DA; University of California Santa Barbara, Santa Barbara, CA, USA., Hoyt SJ; University of Connecticut, Storrs, CT, USA., Jeong H; University of Washington School of Medicine, Seattle, WA, USA., Kamali K; Penn State University, University Park, PA, USA., Pond SLK; Temple University, Philadelphia, PA, USA., LaPolice TM; Penn State University, University Park, PA, USA., Lee C; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Lewis AP; University of Washington School of Medicine, Seattle, WA, USA., Loh YE; University of California Santa Barbara, Santa Barbara, CA, USA., Masterson P; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., McGarvey KM; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., McCoy RC; Johns Hopkins University, Baltimore, MD, USA., Medvedev P; Penn State University, University Park, PA, USA., Miga KH; University of California Santa Cruz, Santa Cruz, CA, USA., Munson KM; University of Washington School of Medicine, Seattle, WA, USA., Pak E; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Paten B; University of California Santa Cruz, Santa Cruz, CA, USA., Pinto BJ; Arizona State University, Tempe, AZ, USA., Potapova T; Stowers Institute, Kansas City, MO, USA., Rhie A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rocha JL; University of California Berkeley, Berkeley, CA, USA., Ryabov F; Masters Program in National Research, University Higher School of Economics, Moscow, Russia., Ryder OA; San Diego Zoological Society, San Diego, CA, USA., Sacco S; University of California Santa Cruz, Santa Cruz, CA, USA., Shafin K; Google, Mountain View, CA, USA., Shepelev VA; Institute of Molecular Genetics, Moscow, Russia., Slon V; Tel Aviv University, Tel Aviv, Israel., Solar SJ; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Storer JM; University of Connecticut, Storrs, CT, USA., Sudmant PH; University of California Berkeley, Berkeley, CA, USA., Sweetalana; Penn State University, University Park, PA, USA., Sweeten A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Johns Hopkins University, Baltimore, MD, USA., Tassia MG; Johns Hopkins University, Baltimore, MD, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Ventura M; Università degli Studi di Bari Aldo Moro, Bari, Italy., Wilson MA; Arizona State University, Tempe, AZ, USA., Young AC; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Zeng H; Penn State University, University Park, PA, USA., Zhang X; Penn State University, University Park, PA, USA., Szpiech ZA; Penn State University, University Park, PA, USA., Huber CD; Penn State University, University Park, PA, USA., Gerton JL; Stowers Institute, Kansas City, MO, USA., Yi SV; University of California Santa Barbara, Santa Barbara, CA, USA., Schatz MC; Johns Hopkins University, Baltimore, MD, USA., Alexandrov IA; Tel Aviv University, Tel Aviv, Israel., Koren S; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., O'Neill RJ; University of Connecticut, Storrs, CT, USA., Eichler EE; University of Washington School of Medicine, Seattle, WA, USA. eee@gs.washington.edu.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA. eee@gs.washington.edu., Phillippy AM; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA. adam.phillippy@nih.gov.
Publikováno v:
Nature [Nature] 2024 Jun; Vol. 630 (8016), pp. 401-411. Date of Electronic Publication: 2024 May 29.
Autor:
Santinello B, Sun R, Amjad A, Hoyt SJ, Ouyang L, Courret C, Drennan R, Leo L, Larracuente AM, Core L, O'Neill RJ, Mellone BG
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 May 15. Date of Electronic Publication: 2024 May 15.
Autor:
Makova KD; Penn State University, University Park, PA, USA., Pickett BD; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Harris RS; Penn State University, University Park, PA, USA., Hartley GA; University of Connecticut, Storrs, CT, USA., Cechova M; University of California Santa Cruz, Santa Cruz, CA, USA., Pal K; Penn State University, University Park, PA, USA., Nurk S; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Yoo D; University of Washington School of Medicine, Seattle, WA, USA., Li Q; Johns Hopkins University, Baltimore, MD, USA., Hebbar P; University of California Santa Cruz, Santa Cruz, CA, USA., McGrath BC; Penn State University, University Park, PA, USA., Antonacci F; Università degli Studi di Bari Aldo Moro, Italy., Aubel M; University of Münster, Münster, Germany., Biddanda A; Johns Hopkins University, Baltimore, MD, USA., Borchers M; Stowers Institute, Kansas City, MO, USA., Bomberg E; University of Münster, Münster, Germany.; MPI for Developmental Biology, Tübingen, Germany., Bouffard GG; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Brooks SY; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Carbone L; Oregon Health & Science University, Portland, OR, USA.; Oregon National Primate Research Center, Hillsboro, OR, USA., Carrel L; Penn State University School of Medicine, Hershey, PA, USA., Carroll A; Google, Mountain View, CA, USA., Chang PC; Google, Mountain View, CA, USA., Chin CS; Foundation of Biological Data Sciences, Belmont, CA, USA., Cook DE; Google, Mountain View, CA, USA., Craig SJC; Penn State University, University Park, PA, USA., de Gennaro L; Università degli Studi di Bari Aldo Moro, Italy., Diekhans M; University of California Santa Cruz, Santa Cruz, CA, USA., Dutra A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Garcia GH; University of Washington School of Medicine, Seattle, WA, USA., Grady PGS; University of Connecticut, Storrs, CT, USA., Green RE; University of California Santa Cruz, Santa Cruz, CA, USA., Haddad D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Hallast P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Harvey WT; University of Washington School of Medicine, Seattle, WA, USA., Hickey G; University of California Santa Cruz, Santa Cruz, CA, USA., Hillis DA; University of California Santa Barbara, Santa Barbara, CA, USA., Hoyt SJ; University of Connecticut, Storrs, CT, USA., Jeong H; University of Washington School of Medicine, Seattle, WA, USA., Kamali K; Penn State University, University Park, PA, USA., Kosakovsky Pond SL; Temple University, Philadelphia, PA, USA., LaPolice TM; Penn State University, University Park, PA, USA., Lee C; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Lewis AP; University of Washington School of Medicine, Seattle, WA, USA., Loh YE; University of California Santa Barbara, Santa Barbara, CA, USA., Masterson P; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., McCoy RC; Johns Hopkins University, Baltimore, MD, USA., Medvedev P; Penn State University, University Park, PA, USA., Miga KH; University of California Santa Cruz, Santa Cruz, CA, USA., Munson KM; University of Washington School of Medicine, Seattle, WA, USA., Pak E; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Paten B; University of California Santa Cruz, Santa Cruz, CA, USA., Pinto BJ; Arizona State University, Tempe, AZ, USA., Potapova T; Stowers Institute, Kansas City, MO, USA., Rhie A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rocha JL; University of California Berkeley, Berkeley, CA, USA., Ryabov F; Masters Program in National Research University Higher School of Economics, Moscow, Russia., Ryder OA; San Diego Zoological Society, San Diego, CA, USA., Sacco S; University of California Santa Cruz, Santa Cruz, CA, USA., Shafin K; Google, Mountain View, CA, USA., Shepelev VA; Institute of Molecular Genetics, Moscow, Russia., Slon V; Tel Aviv University, Israel., Solar SJ; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Storer JM; University of Connecticut, Storrs, CT, USA., Sudmant PH; University of California Berkeley, Berkeley, CA, USA., Sweetalana; Penn State University, University Park, PA, USA., Sweeten A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Johns Hopkins University, Baltimore, MD, USA., Tassia MG; Johns Hopkins University, Baltimore, MD, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Ventura M; Università degli Studi di Bari Aldo Moro, Italy., Wilson MA; Arizona State University, Tempe, AZ, USA., Young AC; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Zeng H; Penn State University, University Park, PA, USA., Zhang X; Penn State University, University Park, PA, USA., Szpiech ZA; Penn State University, University Park, PA, USA., Huber CD; Penn State University, University Park, PA, USA., Gerton JL; Stowers Institute, Kansas City, MO, USA., Yi SV; University of California Santa Barbara, Santa Barbara, CA, USA., Schatz MC; Johns Hopkins University, Baltimore, MD, USA., Alexandrov IA; Tel Aviv University, Israel., Koren S; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., O'Neill RJ; University of Connecticut, Storrs, CT, USA., Eichler E; University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Phillippy AM; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Dec 01. Date of Electronic Publication: 2023 Dec 01.
Autor:
Hallast P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Ebert P; Institute for Medical Biometry and Bioinformatics, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany.; Core Unit Bioinformatics, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Loftus M; Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Yilmaz F; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Audano PA; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Bonder MJ; Division of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands., Zhou W; Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA., Höps W; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Kim K; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Li C; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Hoyt SJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Dishuck PC; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Tsetsos F; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Kwon JY; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Zhu Q; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Munson KM; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Hasenfeld P; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Harvey WT; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Lewis AP; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Kordosky J; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Hoekzema K; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., O'Neill RJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; The University of Connecticut Health Center, Farmington, CT, USA., Korbel JO; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Tyler-Smith C; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Shi X; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Beck CR; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; The University of Connecticut Health Center, Farmington, CT, USA., Marschall T; Institute for Medical Biometry and Bioinformatics, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Konkel MK; Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Lee C; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA. charles.lee@jax.org.
Publikováno v:
Nature [Nature] 2023 Sep; Vol. 621 (7978), pp. 355-364. Date of Electronic Publication: 2023 Aug 23.
Autor:
Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Nurk S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Oxford Nanopore Technologies Inc., Oxford, UK., Cechova M; Faculty of Informatics, Masaryk University, Brno, Czech Republic.; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA., Hoyt SJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Taylor DJ; Department of Biology, Johns Hopkins University, Baltimore, MD, USA., Altemose N; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA., Hook PW; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rautiainen M; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Alexandrov IA; Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.; Center for Algorithmic Biotechnology, Saint Petersburg State University, St Petersburg, Russia.; Department of Anatomy and Anthropology and Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel., Allen J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Asri M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Bzikadze AV; Graduate Program in Bioinformatics and Systems Biology, University of California, San Diego, CA, USA., Chen NC; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Chin CS; GeneDX Holdings Corp, Stamford, CT, USA.; Foundation of Biological Data Science, Belmont, CA, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Department of Genetics, University of Cambridge, Cambridge, UK., Formenti G; The Rockefeller University, New York, NY, USA., Fungtammasan A; DNAnexus, Inc., Mountain View, CA, USA., Garcia Giron C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Garrison E; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA., Gershman A; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA., Gerton JL; Stowers Institute for Medical Research, Kansas City, MO, USA.; University of Kansas Medical Center, Kansas City, MO, USA., Grady PGS; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Guarracino A; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.; Genomics Research Centre, Human Technopole, Milan, Italy., Haggerty L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Halabian R; Institute of Bioinformatics, Faculty of Medicine, University of Münster, Münster, Germany., Hansen NF; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Harris R; Department of Biology, Pennsylvania State University, University Park, PA, USA., Hartley GA; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Harvey WT; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Haukness M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Heinz J; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA., Hourlier T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Hubley RM; Institute for Systems Biology, Seattle, WA, USA., Hunt SE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Hwang S; XDBio Program, Johns Hopkins University, Baltimore, MD, USA., Jain M; Department of Bioengineering, Department of Physics, Northeastern University, Boston, MA, USA., Kesharwani RK; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA., Lewis AP; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Li H; Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA., Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Lucas JK; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Makalowski W; Institute of Bioinformatics, Faculty of Medicine, University of Münster, Münster, Germany., Markovic C; Genome Technology Access Center at the McDonnell Genome Institute, Washington University, St. Louis, MO, USA., Martin FJ; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Mc Cartney AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., McCoy RC; Department of Biology, Johns Hopkins University, Baltimore, MD, USA., McDaniel J; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA., McNulty BM; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Medvedev P; Department of Computer Science and Engineering, Pennsylvania State University, University Park, PA, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.; Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, PA, USA., Mikheenko A; Center for Algorithmic Biotechnology, Saint Petersburg State University, St Petersburg, Russia.; UCL Queen Square Institute of Neurology, UCL, London, UK., Munson KM; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Murphy TD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Olsen HE; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Olson ND; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA., Paulin LF; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA., Ryabov F; Masters Program in National Research University Higher School of Economics, Moscow, Russia., Salzberg SL; Departments of Biomedical Engineering, Computer Science, and Biostatistics, Johns Hopkins University, Baltimore, MD, USA., Sauria MEG; Department of Biology, Johns Hopkins University, Baltimore, MD, USA., Sedlazeck FJ; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.; Department of Computer Science, Rice University, Houston, TX, USA., Shafin K; Google Inc., Mountain View, CA, USA., Shepelev VA; Institute of Molecular Genetics, Moscow, Russia., Shumate A; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA., Storer JM; Institute for Systems Biology, Seattle, WA, USA., Surapaneni L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Taravella Oill AM; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Timp W; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA., Tomaszkiewicz M; Department of Biology, Pennsylvania State University, University Park, PA, USA.; Department of Biomedical Engineering, Pennsylvania State University, State College, PA, USA., Vollger MR; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Walenz BP; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Watwood AC; Department of Biology, Pennsylvania State University, University Park, PA, USA., Weissensteiner MH; Department of Biology, Pennsylvania State University, University Park, PA, USA., Wenger AM; Pacific Biosciences, Menlo Park, CA, USA., Wilson MA; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA., Zarate S; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Zhu Y; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA., Zook JM; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Investigator, Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., O'Neill RJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Genetics and Genome Sciences, UConn Health, Farmington, CT, USA., Schatz MC; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Miga KH; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Makova KD; Department of Biology, Pennsylvania State University, University Park, PA, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA. adam.phillippy@nih.gov.
Publikováno v:
Nature [Nature] 2023 Sep; Vol. 621 (7978), pp. 344-354. Date of Electronic Publication: 2023 Aug 23.